Results 1 - 20 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8569 | 5' | -45.8 | NC_002169.1 | + | 129825 | 0.73 | 0.97783 |
Target: 5'- uUCGAcugaaCGAAcGCGacGAGAUCGUGUGCa- -3' miRNA: 3'- -AGCU-----GCUUuCGU--UUCUAGCACAUGau -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 127910 | 0.68 | 0.99962 |
Target: 5'- gCGGCGAagAAGCAuugaaGGGAUCGUGgugaUGCg- -3' miRNA: 3'- aGCUGCU--UUCGU-----UUCUAGCAC----AUGau -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 120199 | 1.02 | 0.065705 |
Target: 5'- -gGACGAAAGCAAAGAUCGUGUACUAa -3' miRNA: 3'- agCUGCUUUCGUUUCUAGCACAUGAU- -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 120071 | 1.03 | 0.053501 |
Target: 5'- uUCGACGAAAGCAAAGAUCGUGUAUUAc -3' miRNA: 3'- -AGCUGCUUUCGUUUCUAGCACAUGAU- -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 119762 | 1.08 | 0.027035 |
Target: 5'- uUCGACGAAAGCAAAGAUCGUGUACUGa -3' miRNA: 3'- -AGCUGCUUUCGUUUCUAGCACAUGAU- -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 119635 | 0.95 | 0.163936 |
Target: 5'- -gGACGAAAGCAAAGAUCGUGUACc- -3' miRNA: 3'- agCUGCUUUCGUUUCUAGCACAUGau -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 119580 | 1.02 | 0.065705 |
Target: 5'- -gGACGAAAGCAAAGAUCGUGUACUAa -3' miRNA: 3'- agCUGCUUUCGUUUCUAGCACAUGAU- -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 119482 | 0.8 | 0.754068 |
Target: 5'- -gGACGAAAGCAAAGAUCGUcUAUg- -3' miRNA: 3'- agCUGCUUUCGUUUCUAGCAcAUGau -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 119452 | 0.93 | 0.215219 |
Target: 5'- uUCGAUGAAAGCAAAGAUCaUGUACUAa -3' miRNA: 3'- -AGCUGCUUUCGUUUCUAGcACAUGAU- -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 119354 | 0.93 | 0.203966 |
Target: 5'- uUCGAUaAAAGCAAAGAUCGUGUACUAa -3' miRNA: 3'- -AGCUGcUUUCGUUUCUAGCACAUGAU- -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 118888 | 0.75 | 0.945011 |
Target: 5'- aUCGAUGAGAGCcuguAGAUCGgccgugaauuguUGUGCUGa -3' miRNA: 3'- -AGCUGCUUUCGuu--UCUAGC------------ACAUGAU- -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 105660 | 1.01 | 0.076024 |
Target: 5'- -gGACGAAAGCAAAGAUCGUGUACUGu -3' miRNA: 3'- agCUGCUUUCGUUUCUAGCACAUGAU- -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 105569 | 0.93 | 0.209527 |
Target: 5'- -gGAUGAAAGCAAAGAUCGUGUAUUAa -3' miRNA: 3'- agCUGCUUUCGUUUCUAGCACAUGAU- -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 105532 | 1 | 0.090461 |
Target: 5'- uUCGAUGAAAGCAAAGAUCGUGUAUUAc -3' miRNA: 3'- -AGCUGCUUUCGUUUCUAGCACAUGAU- -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 105481 | 0.8 | 0.764445 |
Target: 5'- -gGACGAAAGCAAAcAUUGUGUACUu -3' miRNA: 3'- agCUGCUUUCGUUUcUAGCACAUGAu -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 105441 | 0.96 | 0.146688 |
Target: 5'- uUCGACGAAAGCAAAGAUUGUGUAUg- -3' miRNA: 3'- -AGCUGCUUUCGUUUCUAGCACAUGau -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 105376 | 0.91 | 0.2522 |
Target: 5'- gUCGACGAucuuggacaaAAGCAAAGAUCGUGUAUUAa -3' miRNA: 3'- -AGCUGCU----------UUCGUUUCUAGCACAUGAU- -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 105255 | 1.05 | 0.042241 |
Target: 5'- uUCGAUGAAAGCAAAGAUCGUGUACUAa -3' miRNA: 3'- -AGCUGCUUUCGUUUCUAGCACAUGAU- -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 105236 | 1.09 | 0.024717 |
Target: 5'- gUCGACGAAAGCAAAGAUCGUGUACUAa -3' miRNA: 3'- -AGCUGCUUUCGUUUCUAGCACAUGAU- -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 105125 | 0.84 | 0.578612 |
Target: 5'- cUCuACGAAAGCAAAGAUCaUGUACUAg -3' miRNA: 3'- -AGcUGCUUUCGUUUCUAGcACAUGAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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