Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8571 | 5' | -44.7 | NC_002169.1 | + | 113682 | 1.09 | 0.031632 |
Target: 5'- cGCACACAAGUACAUCGUCAUCGAAAUc -3' miRNA: 3'- -CGUGUGUUCAUGUAGCAGUAGCUUUA- -5' |
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8571 | 5' | -44.7 | NC_002169.1 | + | 62144 | 0.78 | 0.899814 |
Target: 5'- aCACGCuGAGcaaUACGUCGUCGUCGGAAUu -3' miRNA: 3'- cGUGUG-UUC---AUGUAGCAGUAGCUUUA- -5' |
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8571 | 5' | -44.7 | NC_002169.1 | + | 117693 | 0.76 | 0.955904 |
Target: 5'- uGCGCGCcgcuccCGUCGUCGUCGAAAUg -3' miRNA: 3'- -CGUGUGuucau-GUAGCAGUAGCUUUA- -5' |
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8571 | 5' | -44.7 | NC_002169.1 | + | 52681 | 0.74 | 0.981392 |
Target: 5'- ---aACAAGaUACGUUGUCGUCGAAAUu -3' miRNA: 3'- cgugUGUUC-AUGUAGCAGUAGCUUUA- -5' |
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8571 | 5' | -44.7 | NC_002169.1 | + | 43967 | 0.74 | 0.985517 |
Target: 5'- gGCACGuuuCGA--ACGUCGUCGUCGAAAg -3' miRNA: 3'- -CGUGU---GUUcaUGUAGCAGUAGCUUUa -5' |
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8571 | 5' | -44.7 | NC_002169.1 | + | 36213 | 0.72 | 0.994715 |
Target: 5'- gGCGCACAuggACGUuuUGUCGUCGGGAUc -3' miRNA: 3'- -CGUGUGUucaUGUA--GCAGUAGCUUUA- -5' |
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8571 | 5' | -44.7 | NC_002169.1 | + | 110713 | 0.71 | 0.997324 |
Target: 5'- aCACACuAGUAUAUU-UCAUCGAAAUa -3' miRNA: 3'- cGUGUGuUCAUGUAGcAGUAGCUUUA- -5' |
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8571 | 5' | -44.7 | NC_002169.1 | + | 133802 | 0.71 | 0.997772 |
Target: 5'- ---aACAAGUGCGUCGaCGUCGAc-- -3' miRNA: 3'- cgugUGUUCAUGUAGCaGUAGCUuua -5' |
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8571 | 5' | -44.7 | NC_002169.1 | + | 98790 | 0.71 | 0.998047 |
Target: 5'- uUAUugGGGUAacauuuaaaaacacCGUCGUCGUCGAGGUa -3' miRNA: 3'- cGUGugUUCAU--------------GUAGCAGUAGCUUUA- -5' |
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8571 | 5' | -44.7 | NC_002169.1 | + | 85758 | 0.71 | 0.998156 |
Target: 5'- -gGC-CGAugGCAUCGUCGUCGAAAa -3' miRNA: 3'- cgUGuGUUcaUGUAGCAGUAGCUUUa -5' |
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8571 | 5' | -44.7 | NC_002169.1 | + | 26710 | 0.71 | 0.998156 |
Target: 5'- cCACcCAAGUACaAUCuGUCGUCGAGu- -3' miRNA: 3'- cGUGuGUUCAUG-UAG-CAGUAGCUUua -5' |
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8571 | 5' | -44.7 | NC_002169.1 | + | 77856 | 0.7 | 0.998759 |
Target: 5'- gGCACGCAcGUAUucgagGUCG-CGUCGAAGc -3' miRNA: 3'- -CGUGUGUuCAUG-----UAGCaGUAGCUUUa -5' |
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8571 | 5' | -44.7 | NC_002169.1 | + | 75694 | 0.7 | 0.999347 |
Target: 5'- -aACACAauAGUAuCGUCGUCGUCGu--- -3' miRNA: 3'- cgUGUGU--UCAU-GUAGCAGUAGCuuua -5' |
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8571 | 5' | -44.7 | NC_002169.1 | + | 111860 | 0.7 | 0.999347 |
Target: 5'- cCAgAgGAGUGCGU-GUCGUCGAAAa -3' miRNA: 3'- cGUgUgUUCAUGUAgCAGUAGCUUUa -5' |
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8571 | 5' | -44.7 | NC_002169.1 | + | 96395 | 0.69 | 0.999479 |
Target: 5'- gGCGCGCGAGUgGCAgaaUCGU--UCGAGAg -3' miRNA: 3'- -CGUGUGUUCA-UGU---AGCAguAGCUUUa -5' |
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8571 | 5' | -44.7 | NC_002169.1 | + | 119927 | 0.69 | 0.999676 |
Target: 5'- cGUGCAauuGUGCAU-GUCGUCGAAAUu -3' miRNA: 3'- -CGUGUguuCAUGUAgCAGUAGCUUUA- -5' |
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8571 | 5' | -44.7 | NC_002169.1 | + | 9255 | 0.68 | 0.999805 |
Target: 5'- aGCAacgacaACAAGUGuauuguCGUCGUCGUCGuuGUg -3' miRNA: 3'- -CGUg-----UGUUCAU------GUAGCAGUAGCuuUA- -5' |
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8571 | 5' | -44.7 | NC_002169.1 | + | 108455 | 0.68 | 0.99985 |
Target: 5'- uGUACGCcAGcgaaUACGUCGUCAcCGAGGa -3' miRNA: 3'- -CGUGUGuUC----AUGUAGCAGUaGCUUUa -5' |
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8571 | 5' | -44.7 | NC_002169.1 | + | 98481 | 0.68 | 0.99985 |
Target: 5'- uCAUACGuuuUAUAUCGUCGUCGAc-- -3' miRNA: 3'- cGUGUGUuc-AUGUAGCAGUAGCUuua -5' |
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8571 | 5' | -44.7 | NC_002169.1 | + | 101738 | 0.68 | 0.99985 |
Target: 5'- gGCACGCuaaauauuuGcACGUCGUCAUUGAu-- -3' miRNA: 3'- -CGUGUGuu-------CaUGUAGCAGUAGCUuua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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