miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8571 5' -44.7 NC_002169.1 + 1951 0.66 0.999996
Target:  5'- cGC-CGCcgauGGUGuCGUUGUCAUCGAc-- -3'
miRNA:   3'- -CGuGUGu---UCAU-GUAGCAGUAGCUuua -5'
8571 5' -44.7 NC_002169.1 + 6384 0.66 0.999991
Target:  5'- uCACcaGCGGGaACGUCGUCAacagcaUCGAGAUc -3'
miRNA:   3'- cGUG--UGUUCaUGUAGCAGU------AGCUUUA- -5'
8571 5' -44.7 NC_002169.1 + 9255 0.68 0.999805
Target:  5'- aGCAacgacaACAAGUGuauuguCGUCGUCGUCGuuGUg -3'
miRNA:   3'- -CGUg-----UGUUCAU------GUAGCAGUAGCuuUA- -5'
8571 5' -44.7 NC_002169.1 + 9274 0.67 0.999974
Target:  5'- --cUACAGuaAUAUCGUCGUCGAAGa -3'
miRNA:   3'- cguGUGUUcaUGUAGCAGUAGCUUUa -5'
8571 5' -44.7 NC_002169.1 + 26710 0.71 0.998156
Target:  5'- cCACcCAAGUACaAUCuGUCGUCGAGu- -3'
miRNA:   3'- cGUGuGUUCAUG-UAG-CAGUAGCUUua -5'
8571 5' -44.7 NC_002169.1 + 36213 0.72 0.994715
Target:  5'- gGCGCACAuggACGUuuUGUCGUCGGGAUc -3'
miRNA:   3'- -CGUGUGUucaUGUA--GCAGUAGCUUUA- -5'
8571 5' -44.7 NC_002169.1 + 41298 0.66 0.999994
Target:  5'- aCACGCAGGgggagucgAUGUCGUUugcgGUCGAGAg -3'
miRNA:   3'- cGUGUGUUCa-------UGUAGCAG----UAGCUUUa -5'
8571 5' -44.7 NC_002169.1 + 43967 0.74 0.985517
Target:  5'- gGCACGuuuCGA--ACGUCGUCGUCGAAAg -3'
miRNA:   3'- -CGUGU---GUUcaUGUAGCAGUAGCUUUa -5'
8571 5' -44.7 NC_002169.1 + 49330 0.67 0.999981
Target:  5'- uGUACACAauaucGGUAucggcgcCAUCGUCGUCGu--- -3'
miRNA:   3'- -CGUGUGU-----UCAU-------GUAGCAGUAGCuuua -5'
8571 5' -44.7 NC_002169.1 + 52466 0.68 0.999914
Target:  5'- uGCACgACAAGUACAauuuugaucaUCG-CGUCGGu-- -3'
miRNA:   3'- -CGUG-UGUUCAUGU----------AGCaGUAGCUuua -5'
8571 5' -44.7 NC_002169.1 + 52681 0.74 0.981392
Target:  5'- ---aACAAGaUACGUUGUCGUCGAAAUu -3'
miRNA:   3'- cgugUGUUC-AUGUAGCAGUAGCUUUA- -5'
8571 5' -44.7 NC_002169.1 + 59716 0.67 0.999965
Target:  5'- gGUACAUuaaUGCGUCGUUGUCGAu-- -3'
miRNA:   3'- -CGUGUGuucAUGUAGCAGUAGCUuua -5'
8571 5' -44.7 NC_002169.1 + 60182 0.66 0.999996
Target:  5'- aGUACACuguGG-ACAaCGUUGUCGAAAg -3'
miRNA:   3'- -CGUGUGu--UCaUGUaGCAGUAGCUUUa -5'
8571 5' -44.7 NC_002169.1 + 62144 0.78 0.899814
Target:  5'- aCACGCuGAGcaaUACGUCGUCGUCGGAAUu -3'
miRNA:   3'- cGUGUG-UUC---AUGUAGCAGUAGCUUUA- -5'
8571 5' -44.7 NC_002169.1 + 62420 0.67 0.999965
Target:  5'- gGCAUGCAAucGUACucuUCaGUCAUCGAu-- -3'
miRNA:   3'- -CGUGUGUU--CAUGu--AG-CAGUAGCUuua -5'
8571 5' -44.7 NC_002169.1 + 72127 0.66 0.999987
Target:  5'- uGCGCuacguCAAGUACAagcaCGUCAagaccgUCGAAGUc -3'
miRNA:   3'- -CGUGu----GUUCAUGUa---GCAGU------AGCUUUA- -5'
8571 5' -44.7 NC_002169.1 + 74314 0.68 0.999886
Target:  5'- gGCAgGCAacuacaauauaaAG-GCGUCGUCGUCGAc-- -3'
miRNA:   3'- -CGUgUGU------------UCaUGUAGCAGUAGCUuua -5'
8571 5' -44.7 NC_002169.1 + 75694 0.7 0.999347
Target:  5'- -aACACAauAGUAuCGUCGUCGUCGu--- -3'
miRNA:   3'- cgUGUGU--UCAU-GUAGCAGUAGCuuua -5'
8571 5' -44.7 NC_002169.1 + 77856 0.7 0.998759
Target:  5'- gGCACGCAcGUAUucgagGUCG-CGUCGAAGc -3'
miRNA:   3'- -CGUGUGUuCAUG-----UAGCaGUAGCUUUa -5'
8571 5' -44.7 NC_002169.1 + 85758 0.71 0.998156
Target:  5'- -gGC-CGAugGCAUCGUCGUCGAAAa -3'
miRNA:   3'- cgUGuGUUcaUGUAGCAGUAGCUUUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.