Results 1 - 20 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8572 | 3' | -43.5 | NC_002169.1 | + | 105400 | 1.1 | 0.035339 |
Target: 5'- cUUUAGUACACGAUCUUUGCUUUCGUCg -3' miRNA: 3'- -AAAUCAUGUGCUAGAAACGAAAGCAG- -5' |
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8572 | 3' | -43.5 | NC_002169.1 | + | 11477 | 1.08 | 0.045112 |
Target: 5'- -aUAGUACACGAUCUUUGCUUUCGUCg -3' miRNA: 3'- aaAUCAUGUGCUAGAAACGAAAGCAG- -5' |
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8572 | 3' | -43.5 | NC_002169.1 | + | 119418 | 1.08 | 0.045112 |
Target: 5'- uUUUAGUACACGAUCUUUGCUUUCGUCc -3' miRNA: 3'- -AAAUCAUGUGCUAGAAACGAAAGCAG- -5' |
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8572 | 3' | -43.5 | NC_002169.1 | + | 120037 | 1.08 | 0.045112 |
Target: 5'- uUUUAGUACACGAUCUUUGCUUUCGUCc -3' miRNA: 3'- -AAAUCAUGUGCUAGAAACGAAAGCAG- -5' |
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8572 | 3' | -43.5 | NC_002169.1 | + | 119796 | 1.07 | 0.050944 |
Target: 5'- cUUUGGUACACGAUCUUUGCUUUCGUCc -3' miRNA: 3'- -AAAUCAUGUGCUAGAAACGAAAGCAG- -5' |
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8572 | 3' | -43.5 | NC_002169.1 | + | 10935 | 1.07 | 0.050944 |
Target: 5'- cUUUGGUACACGAUCUUUGCUUUCGUCc -3' miRNA: 3'- -AAAUCAUGUGCUAGAAACGAAAGCAG- -5' |
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8572 | 3' | -43.5 | NC_002169.1 | + | 10904 | 1.06 | 0.059272 |
Target: 5'- uUUUAGUACAUGAUCUUUGCUUUCGUCg -3' miRNA: 3'- -AAAUCAUGUGCUAGAAACGAAAGCAG- -5' |
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8572 | 3' | -43.5 | NC_002169.1 | + | 42192 | 1.06 | 0.059272 |
Target: 5'- -aUAGUACACGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaAUCAUGUGCUAGAAACGAAAGCAG- -5' |
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8572 | 3' | -43.5 | NC_002169.1 | + | 11442 | 1.06 | 0.059272 |
Target: 5'- -aUAGUACACGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaAUCAUGUGCUAGAAACGAAAGCAG- -5' |
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8572 | 3' | -43.5 | NC_002169.1 | + | 119602 | 1.05 | 0.068911 |
Target: 5'- --cAGUACACGAUCUUUGCUUUCGUCg -3' miRNA: 3'- aaaUCAUGUGCUAGAAACGAAAGCAG- -5' |
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8572 | 3' | -43.5 | NC_002169.1 | + | 11230 | 1.03 | 0.082476 |
Target: 5'- -cUAGUACAUGAUCUUUGCUUUCGUCg -3' miRNA: 3'- aaAUCAUGUGCUAGAAACGAAAGCAG- -5' |
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8572 | 3' | -43.5 | NC_002169.1 | + | 105501 | 1.03 | 0.090181 |
Target: 5'- --cAGUACACGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaaUCAUGUGCUAGAAACGAAAGCAG- -5' |
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8572 | 3' | -43.5 | NC_002169.1 | + | 52784 | 1.03 | 0.090181 |
Target: 5'- --cGGUACACGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaaUCAUGUGCUAGAAACGAAAGCAG- -5' |
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8572 | 3' | -43.5 | NC_002169.1 | + | 71829 | 1.01 | 0.107684 |
Target: 5'- -cUAGUACAUGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaAUCAUGUGCUAGAAACGAAAGCAG- -5' |
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8572 | 3' | -43.5 | NC_002169.1 | + | 52857 | 1.01 | 0.107684 |
Target: 5'- -cUAGUACAUGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaAUCAUGUGCUAGAAACGAAAGCAG- -5' |
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8572 | 3' | -43.5 | NC_002169.1 | + | 53123 | 1.01 | 0.117589 |
Target: 5'- --cAGUACAUGAUCUUUGCUUUCGUCg -3' miRNA: 3'- aaaUCAUGUGCUAGAAACGAAAGCAG- -5' |
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8572 | 3' | -43.5 | NC_002169.1 | + | 53315 | 0.99 | 0.152602 |
Target: 5'- --cAGUACAUGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaaUCAUGUGCUAGAAACGAAAGCAG- -5' |
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8572 | 3' | -43.5 | NC_002169.1 | + | 104956 | 0.99 | 0.152602 |
Target: 5'- --cAGUACAUGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaaUCAUGUGCUAGAAACGAAAGCAG- -5' |
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8572 | 3' | -43.5 | NC_002169.1 | + | 10817 | 0.98 | 0.161576 |
Target: 5'- -cUAGUACACGAUgUUUGCUUUCGUCg -3' miRNA: 3'- aaAUCAUGUGCUAgAAACGAAAGCAG- -5' |
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8572 | 3' | -43.5 | NC_002169.1 | + | 42065 | 0.97 | 0.175927 |
Target: 5'- aUUUAGUACuCGAUCUUUGCUUUCGUCc -3' miRNA: 3'- -AAAUCAUGuGCUAGAAACGAAAGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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