miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8572 3' -43.5 NC_002169.1 + 104769 0.9 0.398476
Target:  5'- ----aUACAUGAUCUUUGCUUUCGUCa -3'
miRNA:   3'- aaaucAUGUGCUAGAAACGAAAGCAG- -5'
8572 3' -43.5 NC_002169.1 + 11036 0.95 0.245133
Target:  5'- -cUAGUACuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUCAUGuGCUAGAAACGAAAGCAG- -5'
8572 3' -43.5 NC_002169.1 + 11173 0.94 0.25182
Target:  5'- ----aUGCACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaaucAUGUGCUAGAAACGAAAGCAG- -5'
8572 3' -43.5 NC_002169.1 + 42255 0.93 0.302888
Target:  5'- uUUUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AAAUCAUGUGCUAGAAACGAAAGcAG- -5'
8572 3' -43.5 NC_002169.1 + 104833 0.93 0.302888
Target:  5'- uUUUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AAAUCAUGUGCUAGAAACGAAAGcAG- -5'
8572 3' -43.5 NC_002169.1 + 71637 0.92 0.344022
Target:  5'- --cAGUACACGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- aaaUCAUGUGCUAGAAACGAAAGcAG- -5'
8572 3' -43.5 NC_002169.1 + 41999 0.91 0.389024
Target:  5'- --cAGUACACGAUCUUUGCUUUCaUCu -3'
miRNA:   3'- aaaUCAUGUGCUAGAAACGAAAGcAG- -5'
8572 3' -43.5 NC_002169.1 + 42188 0.91 0.389024
Target:  5'- -gUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- aaAUCAUGUGCUAGAAACGAAAGcAG- -5'
8572 3' -43.5 NC_002169.1 + 53042 0.9 0.398476
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- aaAUCAUGUGCUAGAAACGAAAGcAG- -5'
8572 3' -43.5 NC_002169.1 + 10709 0.95 0.245133
Target:  5'- -cUAGUACuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUCAUGuGCUAGAAACGAAAGCAG- -5'
8572 3' -43.5 NC_002169.1 + 105091 0.97 0.186115
Target:  5'- uUUUAGUACACGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AAAUCAUGUGCUAGAAACGAAAGcAG- -5'
8572 3' -43.5 NC_002169.1 + 10817 0.98 0.161576
Target:  5'- -cUAGUACACGAUgUUUGCUUUCGUCg -3'
miRNA:   3'- aaAUCAUGUGCUAgAAACGAAAGCAG- -5'
8572 3' -43.5 NC_002169.1 + 120037 1.08 0.045112
Target:  5'- uUUUAGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAUCAUGUGCUAGAAACGAAAGCAG- -5'
8572 3' -43.5 NC_002169.1 + 10935 1.07 0.050944
Target:  5'- cUUUGGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAUCAUGUGCUAGAAACGAAAGCAG- -5'
8572 3' -43.5 NC_002169.1 + 11442 1.06 0.059272
Target:  5'- -aUAGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUCAUGUGCUAGAAACGAAAGCAG- -5'
8572 3' -43.5 NC_002169.1 + 119602 1.05 0.068911
Target:  5'- --cAGUACACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaaUCAUGUGCUAGAAACGAAAGCAG- -5'
8572 3' -43.5 NC_002169.1 + 52784 1.03 0.090181
Target:  5'- --cGGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaaUCAUGUGCUAGAAACGAAAGCAG- -5'
8572 3' -43.5 NC_002169.1 + 105501 1.03 0.090181
Target:  5'- --cAGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaaUCAUGUGCUAGAAACGAAAGCAG- -5'
8572 3' -43.5 NC_002169.1 + 53123 1.01 0.117589
Target:  5'- --cAGUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaaUCAUGUGCUAGAAACGAAAGCAG- -5'
8572 3' -43.5 NC_002169.1 + 104956 0.99 0.152602
Target:  5'- --cAGUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaaUCAUGUGCUAGAAACGAAAGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.