Results 1 - 20 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8572 | 3' | -43.5 | NC_002169.1 | + | 27548 | 0.66 | 0.999999 |
Target: 5'- ----uUGCACGAUUg--GCgcgUCGUCa -3' miRNA: 3'- aaaucAUGUGCUAGaaaCGaa-AGCAG- -5' |
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8572 | 3' | -43.5 | NC_002169.1 | + | 11761 | 0.92 | 0.318873 |
Target: 5'- ----aUACACGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaaucAUGUGCUAGAAACGAAAGCAG- -5' |
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8572 | 3' | -43.5 | NC_002169.1 | + | 119616 | 0.93 | 0.302888 |
Target: 5'- uUUUAGUACAUGAUCUUUGCUUUCaUCg -3' miRNA: 3'- -AAAUCAUGUGCUAGAAACGAAAGcAG- -5' |
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8572 | 3' | -43.5 | NC_002169.1 | + | 105400 | 1.1 | 0.035339 |
Target: 5'- cUUUAGUACACGAUCUUUGCUUUCGUCg -3' miRNA: 3'- -AAAUCAUGUGCUAGAAACGAAAGCAG- -5' |
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8572 | 3' | -43.5 | NC_002169.1 | + | 104956 | 0.72 | 0.997411 |
Target: 5'- -aUAGU-CA--AUCUUUGCUUUCGUCc -3' miRNA: 3'- aaAUCAuGUgcUAGAAACGAAAGCAG- -5' |
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8572 | 3' | -43.5 | NC_002169.1 | + | 10713 | 0.74 | 0.991683 |
Target: 5'- uUUUAGUACACaAUgUUUGCUUucaucuacgaUCGUCg -3' miRNA: 3'- -AAAUCAUGUGcUAgAAACGAA----------AGCAG- -5' |
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8572 | 3' | -43.5 | NC_002169.1 | + | 42378 | 0.76 | 0.966621 |
Target: 5'- -----aACACaAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaaucaUGUGcUAGAAACGAAAGCAG- -5' |
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8572 | 3' | -43.5 | NC_002169.1 | + | 42453 | 0.79 | 0.910487 |
Target: 5'- --aAGUcaaACACaAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaaUCA---UGUGcUAGAAACGAAAGCAG- -5' |
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8572 | 3' | -43.5 | NC_002169.1 | + | 105600 | 0.81 | 0.838504 |
Target: 5'- ----aUACACaAUCUUUGCUUUCGUCg -3' miRNA: 3'- aaaucAUGUGcUAGAAACGAAAGCAG- -5' |
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8572 | 3' | -43.5 | NC_002169.1 | + | 11132 | 0.92 | 0.3271 |
Target: 5'- gUUUAaUACAUGAUCUUUGCUUUCGUCg -3' miRNA: 3'- -AAAUcAUGUGCUAGAAACGAAAGCAG- -5' |
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8572 | 3' | -43.5 | NC_002169.1 | + | 52978 | 0.83 | 0.725897 |
Target: 5'- uUUUAGUACACcAUCUUUGCUUUCaUCg -3' miRNA: 3'- -AAAUCAUGUGcUAGAAACGAAAGcAG- -5' |
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8572 | 3' | -43.5 | NC_002169.1 | + | 11636 | 0.81 | 0.838504 |
Target: 5'- -cUAGUACAUGAUgUUUGCUUUCaUCg -3' miRNA: 3'- aaAUCAUGUGCUAgAAACGAAAGcAG- -5' |
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8572 | 3' | -43.5 | NC_002169.1 | + | 108374 | 0.66 | 0.999999 |
Target: 5'- ---uGUGC-CGAUU--UGUUUUCGUCg -3' miRNA: 3'- aaauCAUGuGCUAGaaACGAAAGCAG- -5' |
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8572 | 3' | -43.5 | NC_002169.1 | + | 53233 | 0.88 | 0.48972 |
Target: 5'- ----aUACAUGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaaucAUGUGCUAGAAACGAAAGCAG- -5' |
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8572 | 3' | -43.5 | NC_002169.1 | + | 29673 | 0.67 | 0.999997 |
Target: 5'- -----aACGCGAUCggUUGCcUUUUGUCu -3' miRNA: 3'- aaaucaUGUGCUAGa-AACG-AAAGCAG- -5' |
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8572 | 3' | -43.5 | NC_002169.1 | + | 105690 | 0.8 | 0.873213 |
Target: 5'- ----aUACACGAUCUUUGCUUUC-UCg -3' miRNA: 3'- aaaucAUGUGCUAGAAACGAAAGcAG- -5' |
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8572 | 3' | -43.5 | NC_002169.1 | + | 11366 | 0.9 | 0.408074 |
Target: 5'- uUUUAaUACAUGAUCUUUGCUUUCGUCc -3' miRNA: 3'- -AAAUcAUGUGCUAGAAACGAAAGCAG- -5' |
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8572 | 3' | -43.5 | NC_002169.1 | + | 11012 | 0.93 | 0.302888 |
Target: 5'- gUUUAGUACAUGAUCUUUGCUUUCaUCg -3' miRNA: 3'- -AAAUCAUGUGCUAGAAACGAAAGcAG- -5' |
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8572 | 3' | -43.5 | NC_002169.1 | + | 11559 | 0.68 | 0.999971 |
Target: 5'- -----aACACcAUCUUUGUUUUUGUCa -3' miRNA: 3'- aaaucaUGUGcUAGAAACGAAAGCAG- -5' |
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8572 | 3' | -43.5 | NC_002169.1 | + | 105145 | 0.75 | 0.985423 |
Target: 5'- -----cACAUGAUCUUUGCUUUCaUCg -3' miRNA: 3'- aaaucaUGUGCUAGAAACGAAAGcAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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