miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8572 3' -43.5 NC_002169.1 + 105600 0.81 0.838504
Target:  5'- ----aUACACaAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaaucAUGUGcUAGAAACGAAAGCAG- -5'
8572 3' -43.5 NC_002169.1 + 105026 0.81 0.829214
Target:  5'- ----cUACuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaaucAUGuGCUAGAAACGAAAGCAG- -5'
8572 3' -43.5 NC_002169.1 + 41873 0.81 0.8197
Target:  5'- ----aUACACGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- aaaucAUGUGCUAGAAACGAAAGcAG- -5'
8572 3' -43.5 NC_002169.1 + 41772 0.82 0.809972
Target:  5'- ----aUACuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaaucAUGuGCUAGAAACGAAAGCAG- -5'
8572 3' -43.5 NC_002169.1 + 119325 0.83 0.725897
Target:  5'- ----aUAgACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaaucAUgUGCUAGAAACGAAAGCAG- -5'
8572 3' -43.5 NC_002169.1 + 52978 0.83 0.725897
Target:  5'- uUUUAGUACACcAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AAAUCAUGUGcUAGAAACGAAAGcAG- -5'
8572 3' -43.5 NC_002169.1 + 11570 0.84 0.714796
Target:  5'- -cUAGUACuCGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- aaAUCAUGuGCUAGAAACGAAAGcAG- -5'
8572 3' -43.5 NC_002169.1 + 52662 0.88 0.52227
Target:  5'- uUUUAGUACACGAUgUUUGCUUUCaUCg -3'
miRNA:   3'- -AAAUCAUGUGCUAgAAACGAAAGcAG- -5'
8572 3' -43.5 NC_002169.1 + 53233 0.88 0.48972
Target:  5'- ----aUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaaucAUGUGCUAGAAACGAAAGCAG- -5'
8572 3' -43.5 NC_002169.1 + 105202 0.89 0.437715
Target:  5'- uUUUAaUACACGAUCUUUGCUUUUGUCc -3'
miRNA:   3'- -AAAUcAUGUGCUAGAAACGAAAGCAG- -5'
8572 3' -43.5 NC_002169.1 + 11366 0.9 0.408074
Target:  5'- uUUUAaUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAUcAUGUGCUAGAAACGAAAGCAG- -5'
8572 3' -43.5 NC_002169.1 + 104769 0.9 0.398476
Target:  5'- ----aUACAUGAUCUUUGCUUUCGUCa -3'
miRNA:   3'- aaaucAUGUGCUAGAAACGAAAGCAG- -5'
8572 3' -43.5 NC_002169.1 + 53042 0.9 0.398476
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- aaAUCAUGUGCUAGAAACGAAAGcAG- -5'
8572 3' -43.5 NC_002169.1 + 41999 0.91 0.389024
Target:  5'- --cAGUACACGAUCUUUGCUUUCaUCu -3'
miRNA:   3'- aaaUCAUGUGCUAGAAACGAAAGcAG- -5'
8572 3' -43.5 NC_002169.1 + 42188 0.91 0.389024
Target:  5'- -gUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- aaAUCAUGUGCUAGAAACGAAAGcAG- -5'
8572 3' -43.5 NC_002169.1 + 71637 0.92 0.344022
Target:  5'- --cAGUACACGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- aaaUCAUGUGCUAGAAACGAAAGcAG- -5'
8572 3' -43.5 NC_002169.1 + 11132 0.92 0.3271
Target:  5'- gUUUAaUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- -AAAUcAUGUGCUAGAAACGAAAGCAG- -5'
8572 3' -43.5 NC_002169.1 + 11761 0.92 0.318873
Target:  5'- ----aUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaaucAUGUGCUAGAAACGAAAGCAG- -5'
8572 3' -43.5 NC_002169.1 + 42255 0.93 0.302888
Target:  5'- uUUUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AAAUCAUGUGCUAGAAACGAAAGcAG- -5'
8572 3' -43.5 NC_002169.1 + 104833 0.93 0.302888
Target:  5'- uUUUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AAAUCAUGUGCUAGAAACGAAAGcAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.