miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8573 5' -54.4 NC_002169.1 + 105589 0.66 0.93255
Target:  5'- uUGCUUUCGUCGAagaucuuGGAUGaaAGCAAa -3'
miRNA:   3'- -ACGAAAGCGGCUg------UCUGCggUCGUUc -5'
8573 5' -54.4 NC_002169.1 + 21290 0.66 0.93255
Target:  5'- cUGCUUUCGUgGACA-ACaCCAcGCAAGc -3'
miRNA:   3'- -ACGAAAGCGgCUGUcUGcGGU-CGUUC- -5'
8573 5' -54.4 NC_002169.1 + 104780 0.66 0.927229
Target:  5'- uUGCUUUCGUcaCGAUcuuGGACGaaAGCAAa -3'
miRNA:   3'- -ACGAAAGCG--GCUG---UCUGCggUCGUUc -5'
8573 5' -54.4 NC_002169.1 + 10888 0.66 0.927229
Target:  5'- uUGCUUUCGUCGAagaucuuGGACGa-AGCAAa -3'
miRNA:   3'- -ACGAAAGCGGCUg------UCUGCggUCGUUc -5'
8573 5' -54.4 NC_002169.1 + 107263 0.66 0.921084
Target:  5'- uUGCguucgaUCGCCuGAUAGACGugauggcCCAGCAGc -3'
miRNA:   3'- -ACGaa----AGCGG-CUGUCUGC-------GGUCGUUc -5'
8573 5' -54.4 NC_002169.1 + 56588 0.66 0.91583
Target:  5'- aGCacaucgaCGCCGaucucguaaacGCGGGCGCCGGCGu- -3'
miRNA:   3'- aCGaaa----GCGGC-----------UGUCUGCGGUCGUuc -5'
8573 5' -54.4 NC_002169.1 + 77751 0.66 0.91583
Target:  5'- cGCg-UCGUCGGC-GACGCgCGGCAc- -3'
miRNA:   3'- aCGaaAGCGGCUGuCUGCG-GUCGUuc -5'
8573 5' -54.4 NC_002169.1 + 6926 0.66 0.909755
Target:  5'- gGCaucgaCGUCGGCAgaagcaucGACGUCGGCAGGg -3'
miRNA:   3'- aCGaaa--GCGGCUGU--------CUGCGGUCGUUC- -5'
8573 5' -54.4 NC_002169.1 + 50199 0.66 0.909133
Target:  5'- cGUUUUCGCCGA-GGGCGUCuuugauaaagugcGGCAAc -3'
miRNA:   3'- aCGAAAGCGGCUgUCUGCGG-------------UCGUUc -5'
8573 5' -54.4 NC_002169.1 + 62445 0.67 0.90343
Target:  5'- aUGCaUUUCGUCGGCGGuauaGCuCGGCAu- -3'
miRNA:   3'- -ACG-AAAGCGGCUGUCug--CG-GUCGUuc -5'
8573 5' -54.4 NC_002169.1 + 47199 0.67 0.896859
Target:  5'- aGUgUUCGCCGGCcGACGUgCAGCc-- -3'
miRNA:   3'- aCGaAAGCGGCUGuCUGCG-GUCGuuc -5'
8573 5' -54.4 NC_002169.1 + 49451 0.67 0.890046
Target:  5'- --aUUUCGCCGACAGG-GUgGGCAu- -3'
miRNA:   3'- acgAAAGCGGCUGUCUgCGgUCGUuc -5'
8573 5' -54.4 NC_002169.1 + 26359 0.67 0.890046
Target:  5'- aGCcUUCGCCGGC-GACGUCGuuGCGc- -3'
miRNA:   3'- aCGaAAGCGGCUGuCUGCGGU--CGUuc -5'
8573 5' -54.4 NC_002169.1 + 35675 0.68 0.868188
Target:  5'- cGUaUUCGUCGGCauaaaaguAGACGgCGGCGGGa -3'
miRNA:   3'- aCGaAAGCGGCUG--------UCUGCgGUCGUUC- -5'
8573 5' -54.4 NC_002169.1 + 120418 0.68 0.835948
Target:  5'- aUGUUggCGCUGAC-GACGCCcuuGCAAa -3'
miRNA:   3'- -ACGAaaGCGGCUGuCUGCGGu--CGUUc -5'
8573 5' -54.4 NC_002169.1 + 86028 0.68 0.835948
Target:  5'- gGUcgUCGCCGACGgcgcauucGACGUUAGCGGa -3'
miRNA:   3'- aCGaaAGCGGCUGU--------CUGCGGUCGUUc -5'
8573 5' -54.4 NC_002169.1 + 119615 0.69 0.800591
Target:  5'- uUGCUUUCGUCGAagaucuuGGACGaaAGCAAa -3'
miRNA:   3'- -ACGAAAGCGGCUg------UCUGCggUCGUUc -5'
8573 5' -54.4 NC_002169.1 + 120219 0.69 0.800591
Target:  5'- uUGCUUUCGUCGAagaucuuGGACGaaAGCAAa -3'
miRNA:   3'- -ACGAAAGCGGCUg------UCUGCggUCGUUc -5'
8573 5' -54.4 NC_002169.1 + 11216 0.69 0.800591
Target:  5'- uUGCUUUCGUCGAagaucuuGGACGaaAGCAAa -3'
miRNA:   3'- -ACGAAAGCGGCUg------UCUGCggUCGUUc -5'
8573 5' -54.4 NC_002169.1 + 11116 0.69 0.800591
Target:  5'- uUGCUUUCGUCGAagaucuuGGACGaaAGCAAa -3'
miRNA:   3'- -ACGAAAGCGGCUg------UCUGCggUCGUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.