miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8574 5' -53.8 NC_002169.1 + 3362 0.66 0.949852
Target:  5'- -gUCGUCGUCGUcGuCG-UCCUCgUCGg -3'
miRNA:   3'- ugAGCAGCGGCAaCuGCaAGGAG-AGC- -5'
8574 5' -53.8 NC_002169.1 + 86764 0.67 0.945516
Target:  5'- -gUCGUCGUCGUUGAaaCGUa-CUUUCGa -3'
miRNA:   3'- ugAGCAGCGGCAACU--GCAagGAGAGC- -5'
8574 5' -53.8 NC_002169.1 + 78907 0.67 0.925765
Target:  5'- -aUCGUCGUCGUcGuCGUcgUCgUCUCGg -3'
miRNA:   3'- ugAGCAGCGGCAaCuGCA--AGgAGAGC- -5'
8574 5' -53.8 NC_002169.1 + 99799 0.67 0.925765
Target:  5'- -gUCGUCGUCGUcgagaucaUGGCGUacaaucUCCUCggCGg -3'
miRNA:   3'- ugAGCAGCGGCA--------ACUGCA------AGGAGa-GC- -5'
8574 5' -53.8 NC_002169.1 + 125791 0.68 0.908396
Target:  5'- -gUCGUUGUCGUUGGCGgcgCguaUCUCGu -3'
miRNA:   3'- ugAGCAGCGGCAACUGCaa-Gg--AGAGC- -5'
8574 5' -53.8 NC_002169.1 + 122163 0.69 0.881894
Target:  5'- aAUUCGUCGUCGUUGACGcuauugCCg-UCGc -3'
miRNA:   3'- -UGAGCAGCGGCAACUGCaa----GGagAGC- -5'
8574 5' -53.8 NC_002169.1 + 135093 0.69 0.859631
Target:  5'- uGCUCGUCGUCGUcGuccuCG-UCCUCgUCGu -3'
miRNA:   3'- -UGAGCAGCGGCAaCu---GCaAGGAG-AGC- -5'
8574 5' -53.8 NC_002169.1 + 26630 0.69 0.854947
Target:  5'- uCUCGUcccacacgcugacgaCGgCGUUGAUGUUCUUUUCGg -3'
miRNA:   3'- uGAGCA---------------GCgGCAACUGCAAGGAGAGC- -5'
8574 5' -53.8 NC_002169.1 + 29330 0.74 0.621914
Target:  5'- uCUCGUCGCCGUUGacgcggauGCGUUCUggacaCUUGg -3'
miRNA:   3'- uGAGCAGCGGCAAC--------UGCAAGGa----GAGC- -5'
8574 5' -53.8 NC_002169.1 + 71538 0.74 0.601274
Target:  5'- --aCGUUGUCGUUGACGUUCUgcacggugaUCUCGu -3'
miRNA:   3'- ugaGCAGCGGCAACUGCAAGG---------AGAGC- -5'
8574 5' -53.8 NC_002169.1 + 3549 0.75 0.550205
Target:  5'- aAUUCGUCGUCGUUGuCGUcCCUgUCGu -3'
miRNA:   3'- -UGAGCAGCGGCAACuGCAaGGAgAGC- -5'
8574 5' -53.8 NC_002169.1 + 128846 1.08 0.00536
Target:  5'- aACUCGUCGCCGUUGACGUUCCUCUCGu -3'
miRNA:   3'- -UGAGCAGCGGCAACUGCAAGGAGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.