miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8576 3' -56.1 NC_002169.1 + 116599 0.66 0.887723
Target:  5'- uGCUGCUGCCGCCUccgcuGUUguuguuguugUUGCGUu -3'
miRNA:   3'- cUGGCGACGGCGGGcu---UAA----------AACGCGc -5'
8576 3' -56.1 NC_002169.1 + 118924 0.66 0.880705
Target:  5'- -gUCGUUGUCGUCgGGAUUUUgGCGCc -3'
miRNA:   3'- cuGGCGACGGCGGgCUUAAAA-CGCGc -5'
8576 3' -56.1 NC_002169.1 + 80205 0.66 0.872724
Target:  5'- aAUCGCUGCCGCCCGcgaaaagaucgucGAUgacgUUGUuuauuaaaGCGu -3'
miRNA:   3'- cUGGCGACGGCGGGC-------------UUAa---AACG--------CGC- -5'
8576 3' -56.1 NC_002169.1 + 26950 0.66 0.865996
Target:  5'- cGGCgGUguccGCCGCCCGAAUcUUG-GCc -3'
miRNA:   3'- -CUGgCGa---CGGCGGGCUUAaAACgCGc -5'
8576 3' -56.1 NC_002169.1 + 22362 0.66 0.858316
Target:  5'- cGGCCaGCacgUGCCGgCCGGAaagaUUGCGCu -3'
miRNA:   3'- -CUGG-CG---ACGGCgGGCUUaa--AACGCGc -5'
8576 3' -56.1 NC_002169.1 + 92995 0.66 0.858316
Target:  5'- cGCCGUUGCCggguaaaaagucgguGCCCGAGUUgcucaauaauuCGCGg -3'
miRNA:   3'- cUGGCGACGG---------------CGGGCUUAAaac--------GCGC- -5'
8576 3' -56.1 NC_002169.1 + 117664 0.67 0.850427
Target:  5'- aACCGCcGCCGCCgcagccaacaaGAAga-UGCGCGc -3'
miRNA:   3'- cUGGCGaCGGCGGg----------CUUaaaACGCGC- -5'
8576 3' -56.1 NC_002169.1 + 18141 0.68 0.799111
Target:  5'- aGCgGC-GCUGCCCGAAgggugcUUUGCGaCGg -3'
miRNA:   3'- cUGgCGaCGGCGGGCUUa-----AAACGC-GC- -5'
8576 3' -56.1 NC_002169.1 + 45943 0.69 0.722431
Target:  5'- cACCGCcGCCGCCaGAucgagaGCGCGa -3'
miRNA:   3'- cUGGCGaCGGCGGgCUuaaaa-CGCGC- -5'
8576 3' -56.1 NC_002169.1 + 80885 0.7 0.67162
Target:  5'- cGAUCGCcaacgaUGCaCGCCCGAcaaggUGCGCa -3'
miRNA:   3'- -CUGGCG------ACG-GCGGGCUuaaa-ACGCGc -5'
8576 3' -56.1 NC_002169.1 + 62068 0.72 0.578781
Target:  5'- cGAUCugUGCCGUCCGAGccaUUUGCGCGa -3'
miRNA:   3'- -CUGGcgACGGCGGGCUUa--AAACGCGC- -5'
8576 3' -56.1 NC_002169.1 + 129103 0.73 0.488951
Target:  5'- -uCCGUgauaGCCGCUCGGAcauaUUUUGCGCGu -3'
miRNA:   3'- cuGGCGa---CGGCGGGCUU----AAAACGCGC- -5'
8576 3' -56.1 NC_002169.1 + 18247 0.74 0.451121
Target:  5'- cGGCCGCcGCCGuCCuCGAGgggcUUUGCGUGa -3'
miRNA:   3'- -CUGGCGaCGGC-GG-GCUUa---AAACGCGC- -5'
8576 3' -56.1 NC_002169.1 + 134203 1.08 0.002786
Target:  5'- aGACCGCUGCCGCCCGAAUUUUGCGCGc -3'
miRNA:   3'- -CUGGCGACGGCGGGCUUAAAACGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.