miRNA display CGI


Results 1 - 14 of 14 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
859 3' -52.1 NC_000898.1 + 719 0.66 0.986034
Target:  5'- -aGGgGCGGAGAAauguagagagAAGUGGGGCGAg -3'
miRNA:   3'- caCUgUGCCUUUUgg--------UUCGCCUCGCU- -5'
859 3' -52.1 NC_000898.1 + 152978 0.66 0.986034
Target:  5'- aGUGGCccggccggaguGCGGuucAGCCu-GCGGGGUGAa -3'
miRNA:   3'- -CACUG-----------UGCCuu-UUGGuuCGCCUCGCU- -5'
859 3' -52.1 NC_000898.1 + 153887 0.66 0.986034
Target:  5'- -aGGgGCGGAGAAauguagagagAAGUGGGGCGAg -3'
miRNA:   3'- caCUgUGCCUUUUgg--------UUCGCCUCGCU- -5'
859 3' -52.1 NC_000898.1 + 14897 0.67 0.969763
Target:  5'- uGUGAcCAUGGAggaagAAAUgAAGCuGGGGCGGa -3'
miRNA:   3'- -CACU-GUGCCU-----UUUGgUUCG-CCUCGCU- -5'
859 3' -52.1 NC_000898.1 + 3858 0.68 0.95592
Target:  5'- -aGGgAgGGggGACCGAG-GGGGCGu -3'
miRNA:   3'- caCUgUgCCuuUUGGUUCgCCUCGCu -5'
859 3' -52.1 NC_000898.1 + 157026 0.68 0.95592
Target:  5'- -aGGgAgGGggGACCGAG-GGGGCGu -3'
miRNA:   3'- caCUgUgCCuuUUGGUUCgCCUCGCu -5'
859 3' -52.1 NC_000898.1 + 156554 0.7 0.910676
Target:  5'- -gGugGCGGAGGcggugcGCCAGGUGGGGgCGu -3'
miRNA:   3'- caCugUGCCUUU------UGGUUCGCCUC-GCu -5'
859 3' -52.1 NC_000898.1 + 3387 0.7 0.910676
Target:  5'- -gGugGCGGAGGcggugcGCCAGGUGGGGgCGu -3'
miRNA:   3'- caCugUGCCUUU------UGGUUCGCCUC-GCu -5'
859 3' -52.1 NC_000898.1 + 62409 0.7 0.891125
Target:  5'- gGUGACucACGGGcu-UCGAGCGGAGaCGGa -3'
miRNA:   3'- -CACUG--UGCCUuuuGGUUCGCCUC-GCU- -5'
859 3' -52.1 NC_000898.1 + 2782 0.71 0.869429
Target:  5'- -aGGCGCGGGAcAGCgGAcuGCGGGGCGu -3'
miRNA:   3'- caCUGUGCCUU-UUGgUU--CGCCUCGCu -5'
859 3' -52.1 NC_000898.1 + 4392 0.71 0.869429
Target:  5'- -cGcACGCGGAAGGCCGGGCGuauaggaaGGGUGGc -3'
miRNA:   3'- caC-UGUGCCUUUUGGUUCGC--------CUCGCU- -5'
859 3' -52.1 NC_000898.1 + 155950 0.71 0.869429
Target:  5'- -aGGCGCGGGAcAGCgGAcuGCGGGGCGu -3'
miRNA:   3'- caCUGUGCCUU-UUGgUU--CGCCUCGCu -5'
859 3' -52.1 NC_000898.1 + 157559 0.71 0.869429
Target:  5'- -cGcACGCGGAAGGCCGGGCGuauaggaaGGGUGGc -3'
miRNA:   3'- caC-UGUGCCUUUUGGUUCGC--------CUCGCU- -5'
859 3' -52.1 NC_000898.1 + 27234 0.73 0.764529
Target:  5'- --aAUACGGAGAgcuGCCGAGCuGAGCGGa -3'
miRNA:   3'- cacUGUGCCUUU---UGGUUCGcCUCGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.