miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
860 3' -51.8 NC_000898.1 + 104456 0.66 0.991585
Target:  5'- uUCUGGCCgcaUUCGUAcagauACGGAGGCAa -3'
miRNA:   3'- -GGGCUGGag-AGGUAUu----UGCCUCUGUg -5'
860 3' -51.8 NC_000898.1 + 62727 0.66 0.989061
Target:  5'- aUCGACgUCUCUcaauuGUAuuguGACGGAGGCuACg -3'
miRNA:   3'- gGGCUGgAGAGG-----UAU----UUGCCUCUG-UG- -5'
860 3' -51.8 NC_000898.1 + 117018 0.66 0.987596
Target:  5'- -aCGcCCUCUCCGcUAuguCGGAGAUAa -3'
miRNA:   3'- ggGCuGGAGAGGU-AUuu-GCCUCUGUg -5'
860 3' -51.8 NC_000898.1 + 153085 0.67 0.984215
Target:  5'- gUCCGACCUC-CCA-AAACaGAGAaagcaGCg -3'
miRNA:   3'- -GGGCUGGAGaGGUaUUUGcCUCUg----UG- -5'
860 3' -51.8 NC_000898.1 + 49735 0.67 0.980178
Target:  5'- ----uCUUgUCCGUAGACGGAGugGCu -3'
miRNA:   3'- gggcuGGAgAGGUAUUUGCCUCugUG- -5'
860 3' -51.8 NC_000898.1 + 10710 0.68 0.975417
Target:  5'- gCCCGGCCg--CUAUcgGCGGAcGACGu -3'
miRNA:   3'- -GGGCUGGagaGGUAuuUGCCU-CUGUg -5'
860 3' -51.8 NC_000898.1 + 37215 0.68 0.972746
Target:  5'- cUCUGuCCUCUCCGUGAGCacugucaGAGGuCGCg -3'
miRNA:   3'- -GGGCuGGAGAGGUAUUUGc------CUCU-GUG- -5'
860 3' -51.8 NC_000898.1 + 153209 0.68 0.963484
Target:  5'- aCCGACCUC-CCA-AAGCaGAGAaGCa -3'
miRNA:   3'- gGGCUGGAGaGGUaUUUGcCUCUgUG- -5'
860 3' -51.8 NC_000898.1 + 37821 0.68 0.963484
Target:  5'- aCCGAUUgucCUUCAgggggcGCGGGGACACa -3'
miRNA:   3'- gGGCUGGa--GAGGUauu---UGCCUCUGUG- -5'
860 3' -51.8 NC_000898.1 + 112342 0.69 0.959959
Target:  5'- aCCCGuCgUCUCCAaGAACaacaguuaGAGGCACg -3'
miRNA:   3'- -GGGCuGgAGAGGUaUUUGc-------CUCUGUG- -5'
860 3' -51.8 NC_000898.1 + 4239 0.7 0.928698
Target:  5'- uCCCGGCgugUCUCCGUuuAUGGAGAgGu -3'
miRNA:   3'- -GGGCUGg--AGAGGUAuuUGCCUCUgUg -5'
860 3' -51.8 NC_000898.1 + 157406 0.7 0.928698
Target:  5'- uCCCGGCgugUCUCCGUuuAUGGAGAgGu -3'
miRNA:   3'- -GGGCUGg--AGAGGUAuuUGCCUCUgUg -5'
860 3' -51.8 NC_000898.1 + 3355 0.73 0.831134
Target:  5'- gUCgGACCUCgggUCC-UGGACGGAGGgGCg -3'
miRNA:   3'- -GGgCUGGAG---AGGuAUUUGCCUCUgUG- -5'
860 3' -51.8 NC_000898.1 + 156522 0.73 0.831134
Target:  5'- gUCgGACCUCgggUCC-UGGACGGAGGgGCg -3'
miRNA:   3'- -GGgCUGGAG---AGGuAUUUGCCUCUgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.