Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
8621 | 3' | -44.7 | NC_002229.2 | + | 19330 | 0.66 | 0.999998 |
Target: 5'- gGUUgCGauUAUUGCGAACCGGUGaAUGUGg -3' miRNA: 3'- gCAA-GC--GUGACGCUUGGUUAU-UAUAU- -5' |
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8621 | 3' | -44.7 | NC_002229.2 | + | 112515 | 0.68 | 0.999976 |
Target: 5'- cCGUUCGCcCUGU--GCCGAUAgacAUAUAc -3' miRNA: 3'- -GCAAGCGuGACGcuUGGUUAU---UAUAU- -5' |
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8621 | 3' | -44.7 | NC_002229.2 | + | 126826 | 0.68 | 0.999967 |
Target: 5'- gGUUCGCAgUGCGAACg--------- -3' miRNA: 3'- gCAAGCGUgACGCUUGguuauuauau -5' |
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8621 | 3' | -44.7 | NC_002229.2 | + | 11887 | 0.68 | 0.999967 |
Target: 5'- gGUUCGCAgUGCGAACg--------- -3' miRNA: 3'- gCAAGCGUgACGCUUGguuauuauau -5' |
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8621 | 3' | -44.7 | NC_002229.2 | + | 126873 | 0.76 | 0.972542 |
Target: 5'- gCGUUCGCACca-GAGuCCAAUAAUAUAa -3' miRNA: 3'- -GCAAGCGUGacgCUU-GGUUAUUAUAU- -5' |
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8621 | 3' | -44.7 | NC_002229.2 | + | 11840 | 0.76 | 0.972542 |
Target: 5'- gCGUUCGCACca-GAGuCCAAUAAUAUAa -3' miRNA: 3'- -GCAAGCGUGacgCUU-GGUUAUUAUAU- -5' |
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8621 | 3' | -44.7 | NC_002229.2 | + | 12077 | 1.08 | 0.043111 |
Target: 5'- gCGUUCGCACUGCGAACCAAUAAUAUAu -3' miRNA: 3'- -GCAAGCGUGACGCUUGGUUAUUAUAU- -5' |
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8621 | 3' | -44.7 | NC_002229.2 | + | 126636 | 1.08 | 0.043111 |
Target: 5'- gCGUUCGCACUGCGAACCAAUAAUAUAu -3' miRNA: 3'- -GCAAGCGUGACGCUUGGUUAUUAUAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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