miRNA display CGI

Results 1 - 8 of 8 are showing below:
Show page: 1

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
8621	3'	-44.7	NC_002229.2	+	19330	0.66	0.999998
	Target:  5'- gGUUgCGauUAUUGCGAACCGGUGaAUGUGg -3' miRNA:   3'- gCAA-GC--GUGACGCUUGGUUAU-UAUAU- -5'
8621	3'	-44.7	NC_002229.2	+	112515	0.68	0.999976
	Target:  5'- cCGUUCGCcCUGU--GCCGAUAgacAUAUAc -3' miRNA:   3'- -GCAAGCGuGACGcuUGGUUAU---UAUAU- -5'
8621	3'	-44.7	NC_002229.2	+	126826	0.68	0.999967
	Target:  5'- gGUUCGCAgUGCGAACg--------- -3' miRNA:   3'- gCAAGCGUgACGCUUGguuauuauau -5'
8621	3'	-44.7	NC_002229.2	+	11887	0.68	0.999967
	Target:  5'- gGUUCGCAgUGCGAACg--------- -3' miRNA:   3'- gCAAGCGUgACGCUUGguuauuauau -5'
8621	3'	-44.7	NC_002229.2	+	126873	0.76	0.972542
	Target:  5'- gCGUUCGCACca-GAGuCCAAUAAUAUAa -3' miRNA:   3'- -GCAAGCGUGacgCUU-GGUUAUUAUAU- -5'
8621	3'	-44.7	NC_002229.2	+	11840	0.76	0.972542
	Target:  5'- gCGUUCGCACca-GAGuCCAAUAAUAUAa -3' miRNA:   3'- -GCAAGCGUGacgCUU-GGUUAUUAUAU- -5'
8621	3'	-44.7	NC_002229.2	+	12077	1.08	0.043111
	Target:  5'- gCGUUCGCACUGCGAACCAAUAAUAUAu -3' miRNA:   3'- -GCAAGCGUGACGCUUGGUUAUUAUAU- -5'
8621	3'	-44.7	NC_002229.2	+	126636	1.08	0.043111
	Target:  5'- gCGUUCGCACUGCGAACCAAUAAUAUAu -3' miRNA:   3'- -GCAAGCGUGACGCUUGGUUAUUAUAU- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home