Results 1 - 10 of 10 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 8624 | 3' | -45 | NC_002229.2 | + | 9291 | 0.66 | 0.999998 |
|
Target: 5'- --gUAGAAaCGAGAGCuguGAGGuUCUGGc -3' miRNA: 3'- guaAUUUUaGCUCUCG---CUCC-AGAUCu -5' |
|||||||
| 8624 | 3' | -45 | NC_002229.2 | + | 129421 | 0.66 | 0.999998 |
|
Target: 5'- --gUAGAAaCGAGAGCuguGAGGuUCUGGc -3' miRNA: 3'- guaAUUUUaGCUCUCG---CUCC-AGAUCu -5' |
|||||||
| 8624 | 3' | -45 | NC_002229.2 | + | 78424 | 0.73 | 0.994918 |
|
Target: 5'- -cUUGAAAUCGGGAuccgGCGgAGGUUUGGGc -3' miRNA: 3'- guAAUUUUAGCUCU----CGC-UCCAGAUCU- -5' |
|||||||
| 8624 | 3' | -45 | NC_002229.2 | + | 78490 | 0.73 | 0.994918 |
|
Target: 5'- -cUUGAAAUCGGGAuccgGCGgAGGUUUGGGc -3' miRNA: 3'- guAAUUUUAGCUCU----CGC-UCCAGAUCU- -5' |
|||||||
| 8624 | 3' | -45 | NC_002229.2 | + | 78538 | 0.73 | 0.994918 |
|
Target: 5'- -cUUGAAAUCGGGAuccgGCGgAGGUUUGGGc -3' miRNA: 3'- guAAUUUUAGCUCU----CGC-UCCAGAUCU- -5' |
|||||||
| 8624 | 3' | -45 | NC_002229.2 | + | 78604 | 0.73 | 0.994918 |
|
Target: 5'- -cUUGAAAUCGGGAuccgGCGgAGGUUUGGGc -3' miRNA: 3'- guAAUUUUAGCUCU----CGC-UCCAGAUCU- -5' |
|||||||
| 8624 | 3' | -45 | NC_002229.2 | + | 78706 | 0.73 | 0.994918 |
|
Target: 5'- -cUUGAAAUCGGGAuccgGCGgAGGUUUGGGc -3' miRNA: 3'- guAAUUUUAGCUCU----CGC-UCCAGAUCU- -5' |
|||||||
| 8624 | 3' | -45 | NC_002229.2 | + | 78274 | 0.77 | 0.954282 |
|
Target: 5'- -cUUGGAAUCGGGAGUcggcgGAGGUUUGGGc -3' miRNA: 3'- guAAUUUUAGCUCUCG-----CUCCAGAUCU- -5' |
|||||||
| 8624 | 3' | -45 | NC_002229.2 | + | 78322 | 0.79 | 0.905389 |
|
Target: 5'- -cUUGGAAUCGGGAGCcggcgGAGGUUUGGGc -3' miRNA: 3'- guAAUUUUAGCUCUCG-----CUCCAGAUCU- -5' |
|||||||
| 8624 | 3' | -45 | NC_002229.2 | + | 107754 | 1.11 | 0.032386 |
|
Target: 5'- uCAUUAAAAUCGAGAGCGAGGUCUAGAa -3' miRNA: 3'- -GUAAUUUUAGCUCUCGCUCCAGAUCU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home