Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
8637 | 3' | -55.1 | NC_002229.2 | + | 138538 | 0.66 | 0.922601 |
Target: 5'- aCAGCCCggccaauagGCGCGCgguggGCGUa----- -3' miRNA: 3'- gGUCGGGa--------CGCGCGaa---CGCGauauau -5' |
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8637 | 3' | -55.1 | NC_002229.2 | + | 91403 | 0.66 | 0.922601 |
Target: 5'- uUCGGCCCcgcacuuaucUGCGUagucGCUUGCGCg----- -3' miRNA: 3'- -GGUCGGG----------ACGCG----CGAACGCGauauau -5' |
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8637 | 3' | -55.1 | NC_002229.2 | + | 173 | 0.66 | 0.922601 |
Target: 5'- aCAGCCCggccaauagGCGCGCgguggGCGUa----- -3' miRNA: 3'- gGUCGGGa--------CGCGCGaa---CGCGauauau -5' |
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8637 | 3' | -55.1 | NC_002229.2 | + | 137705 | 0.67 | 0.904745 |
Target: 5'- -uGGCCCUGgG-GCUUGgGCUGa--- -3' miRNA: 3'- ggUCGGGACgCgCGAACgCGAUauau -5' |
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8637 | 3' | -55.1 | NC_002229.2 | + | 1006 | 0.67 | 0.904745 |
Target: 5'- -uGGCCCUGgG-GCUUGgGCUGa--- -3' miRNA: 3'- ggUCGGGACgCgCGAACgCGAUauau -5' |
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8637 | 3' | -55.1 | NC_002229.2 | + | 887 | 0.67 | 0.87759 |
Target: 5'- aCGGUCgUGCGCGCggggccGCGC-GUGUGg -3' miRNA: 3'- gGUCGGgACGCGCGaa----CGCGaUAUAU- -5' |
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8637 | 3' | -55.1 | NC_002229.2 | + | 137824 | 0.67 | 0.87759 |
Target: 5'- aCGGUCgUGCGCGCggggccGCGC-GUGUGg -3' miRNA: 3'- gGUCGGgACGCGCGaa----CGCGaUAUAU- -5' |
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8637 | 3' | -55.1 | NC_002229.2 | + | 166531 | 0.68 | 0.854849 |
Target: 5'- -aGGCCCUGaGCuGCUUGCaGCUgAUAUGa -3' miRNA: 3'- ggUCGGGACgCG-CGAACG-CGA-UAUAU- -5' |
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8637 | 3' | -55.1 | NC_002229.2 | + | 146083 | 0.68 | 0.854849 |
Target: 5'- -aGGCCCUGaGCuGCUUGCaGCUgAUAUGa -3' miRNA: 3'- ggUCGGGACgCG-CGAACG-CGA-UAUAU- -5' |
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8637 | 3' | -55.1 | NC_002229.2 | + | 135983 | 1.09 | 0.003381 |
Target: 5'- aCCAGCCCUGCGCGCUUGCGCUAUAUAc -3' miRNA: 3'- -GGUCGGGACGCGCGAACGCGAUAUAU- -5' |
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8637 | 3' | -55.1 | NC_002229.2 | + | 2729 | 1.09 | 0.003381 |
Target: 5'- aCCAGCCCUGCGCGCUUGCGCUAUAUAc -3' miRNA: 3'- -GGUCGGGACGCGCGAACGCGAUAUAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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