miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8638 3' -46.9 NC_002229.2 + 169379 0.66 0.999933
Target:  5'- ---gUGCCCAuuugccGCAGGCuguacUGgGCCGg -3'
miRNA:   3'- guuaAUGGGUuu----UGUUCGu----ACgCGGC- -5'
8638 3' -46.9 NC_002229.2 + 143235 0.66 0.999933
Target:  5'- ---gUGCCCAuuugccGCAGGCuguacUGgGCCGg -3'
miRNA:   3'- guuaAUGGGUuu----UGUUCGu----ACgCGGC- -5'
8638 3' -46.9 NC_002229.2 + 67419 0.66 0.999912
Target:  5'- ----cGCCauuAAAgAAGCAgUGCGCCGc -3'
miRNA:   3'- guuaaUGGgu-UUUgUUCGU-ACGCGGC- -5'
8638 3' -46.9 NC_002229.2 + 55033 0.66 0.999912
Target:  5'- ----gGCUguGAugGAGUAUGCGUCa -3'
miRNA:   3'- guuaaUGGguUUugUUCGUACGCGGc -5'
8638 3' -46.9 NC_002229.2 + 143713 0.66 0.999884
Target:  5'- ----gGCCUuguaAAGGcCAAGCAccUGCGCCGc -3'
miRNA:   3'- guuaaUGGG----UUUU-GUUCGU--ACGCGGC- -5'
8638 3' -46.9 NC_002229.2 + 168901 0.66 0.999884
Target:  5'- ----gGCCUuguaAAGGcCAAGCAccUGCGCCGc -3'
miRNA:   3'- guuaaUGGG----UUUU-GUUCGU--ACGCGGC- -5'
8638 3' -46.9 NC_002229.2 + 29748 0.66 0.999848
Target:  5'- ----cGCCCuguGCGAGCAacaaaaUGUGCCu -3'
miRNA:   3'- guuaaUGGGuuuUGUUCGU------ACGCGGc -5'
8638 3' -46.9 NC_002229.2 + 2877 0.67 0.999748
Target:  5'- cCAGUUAUgCAuGACGcGCAUGCGUaCGg -3'
miRNA:   3'- -GUUAAUGgGUuUUGUuCGUACGCG-GC- -5'
8638 3' -46.9 NC_002229.2 + 135834 0.67 0.999748
Target:  5'- cCAGUUAUgCAuGACGcGCAUGCGUaCGg -3'
miRNA:   3'- -GUUAAUGgGUuUUGUuCGUACGCG-GC- -5'
8638 3' -46.9 NC_002229.2 + 111595 0.67 0.999679
Target:  5'- ---aUACCCGAucguuguAUAAGCAUGCGagCGc -3'
miRNA:   3'- guuaAUGGGUUu------UGUUCGUACGCg-GC- -5'
8638 3' -46.9 NC_002229.2 + 143803 0.67 0.999594
Target:  5'- ----gACCCAGAuCGAGCguggGUGCGCa- -3'
miRNA:   3'- guuaaUGGGUUUuGUUCG----UACGCGgc -5'
8638 3' -46.9 NC_002229.2 + 168811 0.67 0.999594
Target:  5'- ----gACCCAGAuCGAGCguggGUGCGCa- -3'
miRNA:   3'- guuaaUGGGUUUuGUUCG----UACGCGgc -5'
8638 3' -46.9 NC_002229.2 + 19848 0.68 0.999364
Target:  5'- ---gUGCUCGAAuauguuuAGCGUGCGCCc -3'
miRNA:   3'- guuaAUGGGUUUugu----UCGUACGCGGc -5'
8638 3' -46.9 NC_002229.2 + 140101 0.68 0.999275
Target:  5'- gUAAUU-CCCAGAgaaaacugucauuucGCAGGgAUGCGUCGc -3'
miRNA:   3'- -GUUAAuGGGUUU---------------UGUUCgUACGCGGC- -5'
8638 3' -46.9 NC_002229.2 + 172514 0.68 0.999275
Target:  5'- gUAAUU-CCCAGAgaaaacugucauuucGCAGGgAUGCGUCGc -3'
miRNA:   3'- -GUUAAuGGGUUU---------------UGUUCgUACGCGGC- -5'
8638 3' -46.9 NC_002229.2 + 63291 0.69 0.998244
Target:  5'- ----cGCuCCAAAACAguuuugagAGCAucaUGCGCCGc -3'
miRNA:   3'- guuaaUG-GGUUUUGU--------UCGU---ACGCGGC- -5'
8638 3' -46.9 NC_002229.2 + 158065 0.69 0.99677
Target:  5'- ---cUGCCCAAGACAaaccaugcuacuagAGCAucauauuUGCGUCGu -3'
miRNA:   3'- guuaAUGGGUUUUGU--------------UCGU-------ACGCGGC- -5'
8638 3' -46.9 NC_002229.2 + 25516 0.7 0.995055
Target:  5'- gAAUUGCCCAuauC-AGUGUGUGCCu -3'
miRNA:   3'- gUUAAUGGGUuuuGuUCGUACGCGGc -5'
8638 3' -46.9 NC_002229.2 + 145337 0.73 0.96667
Target:  5'- ----gGCCCAGAACGAGgGggacuuggGCGCCa -3'
miRNA:   3'- guuaaUGGGUUUUGUUCgUa-------CGCGGc -5'
8638 3' -46.9 NC_002229.2 + 170192 0.73 0.96667
Target:  5'- --cUUACCCaAGAGCAGuGCGUGgGCUGg -3'
miRNA:   3'- guuAAUGGG-UUUUGUU-CGUACgCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.