miRNA display CGI


Results 21 - 24 of 24 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8638 3' -46.9 NC_002229.2 + 145337 0.73 0.96667
Target:  5'- ----gGCCCAGAACGAGgGggacuuggGCGCCa -3'
miRNA:   3'- guuaaUGGGUUUUGUUCgUa-------CGCGGc -5'
8638 3' -46.9 NC_002229.2 + 170192 0.73 0.96667
Target:  5'- --cUUACCCaAGAGCAGuGCGUGgGCUGg -3'
miRNA:   3'- guuAAUGGG-UUUUGUU-CGUACgCGGC- -5'
8638 3' -46.9 NC_002229.2 + 2588 1.1 0.021004
Target:  5'- cCAAUUACCCAAAACAAGCAUGCGCCGu -3'
miRNA:   3'- -GUUAAUGGGUUUUGUUCGUACGCGGC- -5'
8638 3' -46.9 NC_002229.2 + 136124 1.1 0.021004
Target:  5'- cCAAUUACCCAAAACAAGCAUGCGCCGu -3'
miRNA:   3'- -GUUAAUGGGUUUUGUUCGUACGCGGC- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.