miRNA: 3'- guuaAUGGGUUUUGU--------------UCGU-------ACGCGGC- -5'
miRNA: 3'- gUUAAUGGGUuuuGuUCGUACGCGGc -5'
miRNA: 3'- guuaaUGGGUUUUGUUCgUa-------CGCGGc -5'
miRNA: 3'- guuaAUGGGUuu----UGUUCGu----ACgCGGC- -5'
Results 21 - 24 of 24 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 8638 | 3' | -46.9 | NC_002229.2 | + | 158065 | 0.69 | 0.99677 |
|
Target: 5'- ---cUGCCCAAGACAaaccaugcuacuagAGCAucauauuUGCGUCGu -3' miRNA: 3'- guuaAUGGGUUUUGU--------------UCGU-------ACGCGGC- -5' |
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| 8638 | 3' | -46.9 | NC_002229.2 | + | 25516 | 0.7 | 0.995055 |
|
Target: 5'- gAAUUGCCCAuauC-AGUGUGUGCCu -3' miRNA: 3'- gUUAAUGGGUuuuGuUCGUACGCGGc -5' |
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| 8638 | 3' | -46.9 | NC_002229.2 | + | 167277 | 0.73 | 0.96667 |
|
Target: 5'- ----gGCCCAGAACGAGgGggacuuggGCGCCa -3' miRNA: 3'- guuaaUGGGUUUUGUUCgUa-------CGCGGc -5' |
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| 8638 | 3' | -46.9 | NC_002229.2 | + | 169379 | 0.66 | 0.999933 |
|
Target: 5'- ---gUGCCCAuuugccGCAGGCuguacUGgGCCGg -3' miRNA: 3'- guuaAUGGGUuu----UGUUCGu----ACgCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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