Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8640 | 3' | -50.4 | NC_002229.2 | + | 125 | 1.12 | 0.006727 |
Target: 5'- cCGCCGCCAAUAGCUACGGCAnACAGCc -3' miRNA: 3'- -GCGGCGGUUAUCGAUGCCGUnUGUCG- -5' |
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8640 | 3' | -50.4 | NC_002229.2 | + | 138586 | 1.12 | 0.006727 |
Target: 5'- cCGCCGCCAAUAGCUACGGCAnACAGCc -3' miRNA: 3'- -GCGGCGGUUAUCGAUGCCGUnUGUCG- -5' |
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8640 | 3' | -50.4 | NC_002229.2 | + | 151 | 0.86 | 0.249029 |
Target: 5'- -cCCgGCCAAUAGCUACGcGCAgACAGCc -3' miRNA: 3'- gcGG-CGGUUAUCGAUGC-CGUnUGUCG- -5' |
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8640 | 3' | -50.4 | NC_002229.2 | + | 138560 | 0.86 | 0.249029 |
Target: 5'- -cCCgGCCAAUAGCUACGcGCAgACAGCc -3' miRNA: 3'- gcGG-CGGUUAUCGAUGC-CGUnUGUCG- -5' |
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8640 | 3' | -50.4 | NC_002229.2 | + | 145471 | 0.75 | 0.762865 |
Target: 5'- gGCUGCUAAU-GUUACGGCa-GCAcGCc -3' miRNA: 3'- gCGGCGGUUAuCGAUGCCGunUGU-CG- -5' |
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8640 | 3' | -50.4 | NC_002229.2 | + | 147981 | 0.75 | 0.791775 |
Target: 5'- aGaCUGCUcgGGUGGCUGCGGgAgggGCAGCg -3' miRNA: 3'- gC-GGCGG--UUAUCGAUGCCgUn--UGUCG- -5' |
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8640 | 3' | -50.4 | NC_002229.2 | + | 59562 | 0.75 | 0.766791 |
Target: 5'- aCGCCGgCAucacuggugcgguguAUaccAGCUACGGCGc-UAGCa -3' miRNA: 3'- -GCGGCgGU---------------UA---UCGAUGCCGUnuGUCG- -5' |
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8640 | 3' | -50.4 | NC_002229.2 | + | 164633 | 0.75 | 0.791775 |
Target: 5'- aGaCUGCUcgGGUGGCUGCGGgAgggGCAGCg -3' miRNA: 3'- gC-GGCGG--UUAUCGAUGCCgUn--UGUCG- -5' |
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8640 | 3' | -50.4 | NC_002229.2 | + | 167143 | 0.75 | 0.762865 |
Target: 5'- gGCUGCUAAU-GUUACGGCa-GCAcGCc -3' miRNA: 3'- gCGGCGGUUAuCGAUGCCGunUGU-CG- -5' |
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8640 | 3' | -50.4 | NC_002229.2 | + | 1024 | 0.75 | 0.801116 |
Target: 5'- gGCCGCggacggacccCGGUAGCcccgaGCGGCGccCAGCg -3' miRNA: 3'- gCGGCG----------GUUAUCGa----UGCCGUnuGUCG- -5' |
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8640 | 3' | -50.4 | NC_002229.2 | + | 105548 | 0.74 | 0.836744 |
Target: 5'- -uUCGCCcguuGUGGCUcACGGCGgGCGGUu -3' miRNA: 3'- gcGGCGGu---UAUCGA-UGCCGUnUGUCG- -5' |
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8640 | 3' | -50.4 | NC_002229.2 | + | 49275 | 0.74 | 0.834176 |
Target: 5'- uGUCGCguucauaugaacgaCAAUgAGCUugGGUAuuGCAGCu -3' miRNA: 3'- gCGGCG--------------GUUA-UCGAugCCGUn-UGUCG- -5' |
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8640 | 3' | -50.4 | NC_002229.2 | + | 71174 | 0.74 | 0.845173 |
Target: 5'- gGCCGCCugcuGCUuauccagaagaACGGCAaucucgucGCAGCu -3' miRNA: 3'- gCGGCGGuuauCGA-----------UGCCGUn-------UGUCG- -5' |
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8640 | 3' | -50.4 | NC_002229.2 | + | 166949 | 0.73 | 0.884061 |
Target: 5'- uGCUGCCGuaacauUAGCagcccgACGGCGguuccaGCAGCu -3' miRNA: 3'- gCGGCGGUu-----AUCGa-----UGCCGUn-----UGUCG- -5' |
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8640 | 3' | -50.4 | NC_002229.2 | + | 145665 | 0.73 | 0.884061 |
Target: 5'- uGCUGCCGuaacauUAGCagcccgACGGCGguuccaGCAGCu -3' miRNA: 3'- gCGGCGGUu-----AUCGa-----UGCCGUn-----UGUCG- -5' |
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8640 | 3' | -50.4 | NC_002229.2 | + | 168127 | 0.72 | 0.891143 |
Target: 5'- aGCCGCgAguAUAGCUAUGaCAcGCAGg -3' miRNA: 3'- gCGGCGgU--UAUCGAUGCcGUnUGUCg -5' |
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8640 | 3' | -50.4 | NC_002229.2 | + | 1003 | 0.72 | 0.891143 |
Target: 5'- aCGUgGCCcuggGGCUugGGCugagcGCAGUg -3' miRNA: 3'- -GCGgCGGuua-UCGAugCCGun---UGUCG- -5' |
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8640 | 3' | -50.4 | NC_002229.2 | + | 137708 | 0.72 | 0.891143 |
Target: 5'- aCGUgGCCcuggGGCUugGGCugagcGCAGUg -3' miRNA: 3'- -GCGgCGGuua-UCGAugCCGun---UGUCG- -5' |
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8640 | 3' | -50.4 | NC_002229.2 | + | 144487 | 0.72 | 0.891143 |
Target: 5'- aGCCGCgAguAUAGCUAUGaCAcGCAGg -3' miRNA: 3'- gCGGCGgU--UAUCGAUGCcGUnUGUCg -5' |
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8640 | 3' | -50.4 | NC_002229.2 | + | 148249 | 0.71 | 0.93677 |
Target: 5'- cCGCUGCCcAUAGCccacgcuccgguCGGCcuggACAGCa -3' miRNA: 3'- -GCGGCGGuUAUCGau----------GCCGun--UGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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