miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8640 3' -50.4 NC_002229.2 + 71174 0.74 0.845173
Target:  5'- gGCCGCCugcuGCUuauccagaagaACGGCAaucucgucGCAGCu -3'
miRNA:   3'- gCGGCGGuuauCGA-----------UGCCGUn-------UGUCG- -5'
8640 3' -50.4 NC_002229.2 + 63628 0.7 0.963862
Target:  5'- uGCaGCCGAUAGaUUACuuuuagggGGUAggGCAGCg -3'
miRNA:   3'- gCGgCGGUUAUC-GAUG--------CCGUn-UGUCG- -5'
8640 3' -50.4 NC_002229.2 + 130881 0.7 0.952418
Target:  5'- uGCCGCCAGcUAGUUGagaaGCGcACAGa -3'
miRNA:   3'- gCGGCGGUU-AUCGAUgc--CGUnUGUCg -5'
8640 3' -50.4 NC_002229.2 + 14175 0.7 0.948117
Target:  5'- cCGCCggGCCAAcAGg-AUGGCAucgGCAGCu -3'
miRNA:   3'- -GCGG--CGGUUaUCgaUGCCGUn--UGUCG- -5'
8640 3' -50.4 NC_002229.2 + 18462 0.71 0.943566
Target:  5'- gGCUGCCAgagGUGGUU-CGGCGcAUcGCu -3'
miRNA:   3'- gCGGCGGU---UAUCGAuGCCGUnUGuCG- -5'
8640 3' -50.4 NC_002229.2 + 148249 0.71 0.93677
Target:  5'- cCGCUGCCcAUAGCccacgcuccgguCGGCcuggACAGCa -3'
miRNA:   3'- -GCGGCGGuUAUCGau----------GCCGun--UGUCG- -5'
8640 3' -50.4 NC_002229.2 + 137708 0.72 0.891143
Target:  5'- aCGUgGCCcuggGGCUugGGCugagcGCAGUg -3'
miRNA:   3'- -GCGgCGGuua-UCGAugCCGun---UGUCG- -5'
8640 3' -50.4 NC_002229.2 + 144487 0.72 0.891143
Target:  5'- aGCCGCgAguAUAGCUAUGaCAcGCAGg -3'
miRNA:   3'- gCGGCGgU--UAUCGAUGCcGUnUGUCg -5'
8640 3' -50.4 NC_002229.2 + 145665 0.73 0.884061
Target:  5'- uGCUGCCGuaacauUAGCagcccgACGGCGguuccaGCAGCu -3'
miRNA:   3'- gCGGCGGUu-----AUCGa-----UGCCGUn-----UGUCG- -5'
8640 3' -50.4 NC_002229.2 + 164568 0.69 0.967207
Target:  5'- gGCCGaCCGGagcgugGGCUAUGG---GCAGCg -3'
miRNA:   3'- gCGGC-GGUUa-----UCGAUGCCgunUGUCG- -5'
8640 3' -50.4 NC_002229.2 + 137895 0.69 0.973227
Target:  5'- gCGCCGCUcggGGCUAcCGGgGuccguccGCGGCc -3'
miRNA:   3'- -GCGGCGGuuaUCGAU-GCCgUn------UGUCG- -5'
8640 3' -50.4 NC_002229.2 + 166913 0.68 0.982801
Target:  5'- gGCCGCgGAgAGCgcaGGag-GCAGCg -3'
miRNA:   3'- gCGGCGgUUaUCGaugCCgunUGUCG- -5'
8640 3' -50.4 NC_002229.2 + 155260 0.66 0.996224
Target:  5'- aGCUuGUgGAUAGUUGgGGCg-GCAGa -3'
miRNA:   3'- gCGG-CGgUUAUCGAUgCCGunUGUCg -5'
8640 3' -50.4 NC_002229.2 + 18916 0.67 0.993916
Target:  5'- uGaCCGCCAAUaaaauauuuuuuaAGCU-CGGgGggAUGGCa -3'
miRNA:   3'- gC-GGCGGUUA-------------UCGAuGCCgUn-UGUCG- -5'
8640 3' -50.4 NC_002229.2 + 138057 0.67 0.993455
Target:  5'- gCGCCGUgGGgcGCgcggACGGCGucgcucccacacgcGCGGCc -3'
miRNA:   3'- -GCGGCGgUUauCGa---UGCCGUn-------------UGUCG- -5'
8640 3' -50.4 NC_002229.2 + 743 0.67 0.989533
Target:  5'- -cCCGCCGA-GGCUGacagaGGCGaacucuucGCGGCg -3'
miRNA:   3'- gcGGCGGUUaUCGAUg----CCGUn-------UGUCG- -5'
8640 3' -50.4 NC_002229.2 + 165928 0.68 0.988085
Target:  5'- cCGuuGCCAAacgaucccAGUa--GGCAgaGCAGCg -3'
miRNA:   3'- -GCggCGGUUa-------UCGaugCCGUn-UGUCG- -5'
8640 3' -50.4 NC_002229.2 + 106628 0.68 0.988085
Target:  5'- aCGauaUGCCAuuGUGGCUAUGuuGCAaGCAGa -3'
miRNA:   3'- -GCg--GCGGU--UAUCGAUGC--CGUnUGUCg -5'
8640 3' -50.4 NC_002229.2 + 153369 0.68 0.986486
Target:  5'- uGCUGCauuccccuUAGUAGCgACGGCAcgACAu- -3'
miRNA:   3'- gCGGCG--------GUUAUCGaUGCCGUn-UGUcg -5'
8640 3' -50.4 NC_002229.2 + 139270 0.68 0.984728
Target:  5'- uGCCGCCAAacuuguGCcaaACGGaCGggUAGCg -3'
miRNA:   3'- gCGGCGGUUau----CGa--UGCC-GUnuGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.