miRNA display CGI

Results 1 - 8 of 8 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
8641	5'	-61.4	NC_002229.2	+	123261	0.66	0.739358
	Target:  5'- aUCGCAGCUCCCGGcguauacGUCUaGAUuuGu -3' miRNA:   3'- gAGCGUCGGGGGCC-------UAGGcCUAggCu -5'
8641	5'	-61.4	NC_002229.2	+	164834	0.69	0.558083
	Target:  5'- aCUCGauGUCCCCGGAUUCGGGggaaCCGu -3' miRNA:   3'- -GAGCguCGGGGGCCUAGGCCUa---GGCu -5'
8641	5'	-61.4	NC_002229.2	+	147780	0.69	0.558083
	Target:  5'- aCUCGauGUCCCCGGAUUCGGGggaaCCGu -3' miRNA:   3'- -GAGCguCGGGGGCCUAGGCCUa---GGCu -5'
8641	5'	-61.4	NC_002229.2	+	147127	0.7	0.492835
	Target:  5'- gUUGCAGCCCCCcGAguaCGGGgggCCGGc -3' miRNA:   3'- gAGCGUCGGGGGcCUag-GCCUa--GGCU- -5'
8641	5'	-61.4	NC_002229.2	+	165488	0.7	0.492835
	Target:  5'- gUUGCAGCCCCCcGAguaCGGGgggCCGGc -3' miRNA:   3'- gAGCGUCGGGGGcCUag-GCCUa--GGCU- -5'
8641	5'	-61.4	NC_002229.2	+	138515	0.72	0.382321
	Target:  5'- -cCGgGGUCUgcgggaUCGGAUCCGGAUCCGGg -3' miRNA:   3'- gaGCgUCGGG------GGCCUAGGCCUAGGCU- -5'
8641	5'	-61.4	NC_002229.2	+	173885	0.75	0.258915
	Target:  5'- uCUCGCAGCCCCCGGAUCC-------- -3' miRNA:   3'- -GAGCGUCGGGGGCCUAGGccuaggcu -5'
8641	5'	-61.4	NC_002229.2	+	138729	1.08	0.001529
	Target:  5'- uCUCGCAGCCCCCGGAUCCGGAUCCGAu -3' miRNA:   3'- -GAGCGUCGGGGGCCUAGGCCUAGGCU- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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