miRNA display CGI

Results 1 - 11 of 11 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
8642	3'	-54.5	NC_002229.2	+	106999	0.66	0.961625
	Target:  5'- gAGAAugCUCUCGCuuggaaacGGaCCGcgaaACAGGCc -3' miRNA:   3'- gUUUUugGAGAGCG--------CC-GGC----UGUCCGu -5'
8642	3'	-54.5	NC_002229.2	+	56193	0.66	0.945791
	Target:  5'- aCAAAAugCUCUgGuuGCCGACAaGCc -3' miRNA:   3'- -GUUUUugGAGAgCgcCGGCUGUcCGu -5'
8642	3'	-54.5	NC_002229.2	+	71880	0.66	0.941248
	Target:  5'- --uAGGCgUCggGCGGCCGACucaauucGGCAg -3' miRNA:   3'- guuUUUGgAGagCGCCGGCUGu------CCGU- -5'
8642	3'	-54.5	NC_002229.2	+	730	0.67	0.936465
	Target:  5'- aCAGAGGCgaaCUCuUCGCGGCggcaaUGGCGGGUg -3' miRNA:   3'- -GUUUUUG---GAG-AGCGCCG-----GCUGUCCGu -5'
8642	3'	-54.5	NC_002229.2	+	137981	0.67	0.936465
	Target:  5'- aCAGAGGCgaaCUCuUCGCGGCggcaaUGGCGGGUg -3' miRNA:   3'- -GUUUUUG---GAG-AGCGCCG-----GCUGUCCGu -5'
8642	3'	-54.5	NC_002229.2	+	693	0.69	0.860493
	Target:  5'- ---cGGCCgacCGCGGCCuGCGGGCGa -3' miRNA:   3'- guuuUUGGagaGCGCCGGcUGUCCGU- -5'
8642	3'	-54.5	NC_002229.2	+	138018	0.69	0.860493
	Target:  5'- ---cGGCCgacCGCGGCCuGCGGGCGa -3' miRNA:   3'- guuuUUGGagaGCGCCGGcUGUCCGU- -5'
8642	3'	-54.5	NC_002229.2	+	137426	0.9	0.071717
	Target:  5'- -uAAAACCUCUCGCGGCCGACAGaCAg -3' miRNA:   3'- guUUUUGGAGAGCGCCGGCUGUCcGU- -5'
8642	3'	-54.5	NC_002229.2	+	1285	0.9	0.071717
	Target:  5'- -uAAAACCUCUCGCGGCCGACAGaCAg -3' miRNA:   3'- guUUUUGGAGAGCGCCGGCUGUCcGU- -5'
8642	3'	-54.5	NC_002229.2	+	138905	1.09	0.004516
	Target:  5'- cCAAAAACCUCUCGCGGCCGACAGGCAg -3' miRNA:   3'- -GUUUUUGGAGAGCGCCGGCUGUCCGU- -5'
8642	3'	-54.5	NC_002229.2	+	173709	1.09	0.004516
	Target:  5'- cCAAAAACCUCUCGCGGCCGACAGGCAg -3' miRNA:   3'- -GUUUUUGGAGAGCGCCGGCUGUCCGU- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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