miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8650 5' -46.1 NC_002229.2 + 170300 0.7 0.998991
Target:  5'- gCCCUCCCGGGGGAGuaucuGGAGCgGg- -3'
miRNA:   3'- -GGGGGGGUUUUUUUuuu--CCUUGgCac -5'
8650 5' -46.1 NC_002229.2 + 169123 0.67 0.999927
Target:  5'- --aCCCCAAGAcccGAAAGGGACCcUGc -3'
miRNA:   3'- gggGGGGUUUUuu-UUUUCCUUGGcAC- -5'
8650 5' -46.1 NC_002229.2 + 168228 0.67 0.999978
Target:  5'- aCUCUUCCGAAAcgGAAAAGGGAAUCu-- -3'
miRNA:   3'- -GGGGGGGUUUU--UUUUUUCCUUGGcac -5'
8650 5' -46.1 NC_002229.2 + 165795 0.7 0.998323
Target:  5'- cUCCCCCCAGAAAuguccccggauaaucGAacugccGAGGGAACCc-- -3'
miRNA:   3'- -GGGGGGGUUUUU---------------UU------UUUCCUUGGcac -5'
8650 5' -46.1 NC_002229.2 + 165561 0.77 0.915038
Target:  5'- cUCCCCCCAGAGAAGAAGucGAACUGa- -3'
miRNA:   3'- -GGGGGGGUUUUUUUUUUc-CUUGGCac -5'
8650 5' -46.1 NC_002229.2 + 165494 0.77 0.932313
Target:  5'- gCCCCCCGAGuac--GGGGGGCCGg- -3'
miRNA:   3'- gGGGGGGUUUuuuuuUUCCUUGGCac -5'
8650 5' -46.1 NC_002229.2 + 165215 0.68 0.99977
Target:  5'- uCCCCCCCGAGcccuccccAGGcuCCGUc -3'
miRNA:   3'- -GGGGGGGUUUuuuuuu--UCCuuGGCAc -5'
8650 5' -46.1 NC_002229.2 + 164827 0.7 0.998503
Target:  5'- -gUCCCCGGAuuc-GGGGGAACCGUc -3'
miRNA:   3'- ggGGGGGUUUuuuuUUUCCUUGGCAc -5'
8650 5' -46.1 NC_002229.2 + 162192 0.66 0.999994
Target:  5'- ------aAAAAAAAAGAGGAACCGUGc -3'
miRNA:   3'- gggggggUUUUUUUUUUCCUUGGCAC- -5'
8650 5' -46.1 NC_002229.2 + 162146 1.11 0.024115
Target:  5'- cCCCCCCCAAAAAAAAAAGGAACCGUGc -3'
miRNA:   3'- -GGGGGGGUUUUUUUUUUCCUUGGCAC- -5'
8650 5' -46.1 NC_002229.2 + 162135 0.68 0.999902
Target:  5'- uUCCCCCCGccuauAGAGAGGuuaacccAGGAgacacGCUGUGg -3'
miRNA:   3'- -GGGGGGGUu----UUUUUUU-------UCCU-----UGGCAC- -5'
8650 5' -46.1 NC_002229.2 + 152486 0.75 0.963415
Target:  5'- cCCCCCCCAuccau-GAAGGGG-CGUGu -3'
miRNA:   3'- -GGGGGGGUuuuuuuUUUCCUUgGCAC- -5'
8650 5' -46.1 NC_002229.2 + 150901 0.66 0.99999
Target:  5'- cCCCCCCCuuuuuuuuucGAGuuucgcuuGGACCGUGu -3'
miRNA:   3'- -GGGGGGGuuuuuuuu--UUC--------CUUGGCAC- -5'
8650 5' -46.1 NC_002229.2 + 150479 0.68 0.999902
Target:  5'- uUCCCCCCGccuauAGAGAGGuuaacccAGGAgacacGCUGUGg -3'
miRNA:   3'- -GGGGGGGUu----UUUUUUU-------UCCU-----UGGCAC- -5'
8650 5' -46.1 NC_002229.2 + 150468 1.11 0.024115
Target:  5'- cCCCCCCCAAAAAAAAAAGGAACCGUGc -3'
miRNA:   3'- -GGGGGGGUUUUUUUUUUCCUUGGCAC- -5'
8650 5' -46.1 NC_002229.2 + 150422 0.66 0.999994
Target:  5'- ------aAAAAAAAAGAGGAACCGUGc -3'
miRNA:   3'- gggggggUUUUUUUUUUCCUUGGCAC- -5'
8650 5' -46.1 NC_002229.2 + 147787 0.7 0.998503
Target:  5'- -gUCCCCGGAuuc-GGGGGAACCGUc -3'
miRNA:   3'- ggGGGGGUUUuuuuUUUCCUUGGCAc -5'
8650 5' -46.1 NC_002229.2 + 147399 0.68 0.99977
Target:  5'- uCCCCCCCGAGcccuccccAGGcuCCGUc -3'
miRNA:   3'- -GGGGGGGUUUuuuuuu--UCCuuGGCAc -5'
8650 5' -46.1 NC_002229.2 + 147121 0.77 0.932313
Target:  5'- gCCCCCCGAGuac--GGGGGGCCGg- -3'
miRNA:   3'- gGGGGGGUUUuuuuuUUCCUUGGCac -5'
8650 5' -46.1 NC_002229.2 + 147054 0.77 0.915038
Target:  5'- cUCCCCCCAGAGAAGAAGucGAACUGa- -3'
miRNA:   3'- -GGGGGGGUUUUUUUUUUc-CUUGGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.