miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8650 5' -46.1 NC_002229.2 + 17 0.68 0.999791
Target:  5'- aCCCCggCCCAcaGGAAGGGgcGGGGCaCGUGc -3'
miRNA:   3'- -GGGG--GGGU--UUUUUUUuuCCUUG-GCAC- -5'
8650 5' -46.1 NC_002229.2 + 4594 0.66 0.999986
Target:  5'- uCUCCCCCAcauccggcuccGGAGCCGg- -3'
miRNA:   3'- -GGGGGGGUuuuuuuuuu--CCUUGGCac -5'
8650 5' -46.1 NC_002229.2 + 4816 0.67 0.999944
Target:  5'- aCCCCCCCuccucccgaugcGGAGGAGCUuUGc -3'
miRNA:   3'- -GGGGGGGuuuuuuu-----UUUCCUUGGcAC- -5'
8650 5' -46.1 NC_002229.2 + 4939 0.67 0.999944
Target:  5'- aCCCCCCCuccucccgauacGGAGGAACUuUGc -3'
miRNA:   3'- -GGGGGGGuuuuuuu-----UUUCCUUGGcAC- -5'
8650 5' -46.1 NC_002229.2 + 6553 0.67 0.999945
Target:  5'- cCCCCCCCGuguuacAAAuucgcguuguuuGAGAuauGGGACgGUGg -3'
miRNA:   3'- -GGGGGGGU------UUU------------UUUUuu-CCUUGgCAC- -5'
8650 5' -46.1 NC_002229.2 + 6914 0.66 0.999992
Target:  5'- -aCCCCCGAG---GGAAGGAAaaaGUGc -3'
miRNA:   3'- ggGGGGGUUUuuuUUUUCCUUgg-CAC- -5'
8650 5' -46.1 NC_002229.2 + 9732 0.76 0.950326
Target:  5'- gCCCCCCCAGAAAGAauaaucacugcuucGAAcGGAGCuCGa- -3'
miRNA:   3'- -GGGGGGGUUUUUUU--------------UUU-CCUUG-GCac -5'
8650 5' -46.1 NC_002229.2 + 10841 0.67 0.999951
Target:  5'- cCCCCCCCAcaaaaaaaaacaaaaAAAAAAAacugucuuauAAGGAGCa-UGg -3'
miRNA:   3'- -GGGGGGGU---------------UUUUUUU----------UUCCUUGgcAC- -5'
8650 5' -46.1 NC_002229.2 + 12428 0.71 0.996358
Target:  5'- gCUCCCCAGGGuGGAAAAGGGGCgGa- -3'
miRNA:   3'- gGGGGGGUUUU-UUUUUUCCUUGgCac -5'
8650 5' -46.1 NC_002229.2 + 32160 0.69 0.999335
Target:  5'- gCCCCCCAGccuGGGAuAGGugagacCCGUGu -3'
miRNA:   3'- gGGGGGGUUuu-UUUUuUCCuu----GGCAC- -5'
8650 5' -46.1 NC_002229.2 + 39365 0.74 0.982819
Target:  5'- aCCCCCCCGuuuAGAAuuauGGGAACgGg- -3'
miRNA:   3'- -GGGGGGGUuuuUUUUu---UCCUUGgCac -5'
8650 5' -46.1 NC_002229.2 + 45444 0.76 0.947194
Target:  5'- -gCCUCUAGAGAAAGAGGGGACCa-- -3'
miRNA:   3'- ggGGGGGUUUUUUUUUUCCUUGGcac -5'
8650 5' -46.1 NC_002229.2 + 47848 0.75 0.970056
Target:  5'- gCgCCCCAGAucugauguacauGAGAGAAGGAACUGUu -3'
miRNA:   3'- gGgGGGGUUU------------UUUUUUUCCUUGGCAc -5'
8650 5' -46.1 NC_002229.2 + 55727 0.75 0.970056
Target:  5'- gCUCCCCCAuggcccaucGAGuucuGGAAGGAACCGg- -3'
miRNA:   3'- -GGGGGGGU---------UUUuu--UUUUCCUUGGCac -5'
8650 5' -46.1 NC_002229.2 + 62179 0.67 0.999959
Target:  5'- uCCCCCaCCAGu------GGGuucAACCGUGa -3'
miRNA:   3'- -GGGGG-GGUUuuuuuuuUCC---UUGGCAC- -5'
8650 5' -46.1 NC_002229.2 + 98876 0.71 0.996358
Target:  5'- aCCCCCCUucGAAcGAGAAGGGAaacuuGCCa-- -3'
miRNA:   3'- -GGGGGGG--UUUuUUUUUUCCU-----UGGcac -5'
8650 5' -46.1 NC_002229.2 + 106174 0.66 0.999988
Target:  5'- gCCCCCUCugcau--AAAGGAGauCCGUa -3'
miRNA:   3'- -GGGGGGGuuuuuuuUUUCCUU--GGCAc -5'
8650 5' -46.1 NC_002229.2 + 107011 0.66 0.999988
Target:  5'- uCCCCCCCGccuGAGAAugcucucgcuugGAAAcGGACCGc- -3'
miRNA:   3'- -GGGGGGGU---UUUUU------------UUUUcCUUGGCac -5'
8650 5' -46.1 NC_002229.2 + 121714 0.68 0.999875
Target:  5'- uCCgaCCCCAGAGAGGGA--GAGCCGg- -3'
miRNA:   3'- -GGg-GGGGUUUUUUUUUucCUUGGCac -5'
8650 5' -46.1 NC_002229.2 + 122208 0.68 0.999875
Target:  5'- uCCgaCCCCAGAGAGGGA--GAGCCGg- -3'
miRNA:   3'- -GGg-GGGGUUUUUUUUUucCUUGGCac -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.