Results 1 - 20 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8650 | 5' | -46.1 | NC_002229.2 | + | 17 | 0.68 | 0.999791 |
Target: 5'- aCCCCggCCCAcaGGAAGGGgcGGGGCaCGUGc -3' miRNA: 3'- -GGGG--GGGU--UUUUUUUuuCCUUG-GCAC- -5' |
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8650 | 5' | -46.1 | NC_002229.2 | + | 4594 | 0.66 | 0.999986 |
Target: 5'- uCUCCCCCAcauccggcuccGGAGCCGg- -3' miRNA: 3'- -GGGGGGGUuuuuuuuuu--CCUUGGCac -5' |
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8650 | 5' | -46.1 | NC_002229.2 | + | 4816 | 0.67 | 0.999944 |
Target: 5'- aCCCCCCCuccucccgaugcGGAGGAGCUuUGc -3' miRNA: 3'- -GGGGGGGuuuuuuu-----UUUCCUUGGcAC- -5' |
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8650 | 5' | -46.1 | NC_002229.2 | + | 4939 | 0.67 | 0.999944 |
Target: 5'- aCCCCCCCuccucccgauacGGAGGAACUuUGc -3' miRNA: 3'- -GGGGGGGuuuuuuu-----UUUCCUUGGcAC- -5' |
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8650 | 5' | -46.1 | NC_002229.2 | + | 6553 | 0.67 | 0.999945 |
Target: 5'- cCCCCCCCGuguuacAAAuucgcguuguuuGAGAuauGGGACgGUGg -3' miRNA: 3'- -GGGGGGGU------UUU------------UUUUuu-CCUUGgCAC- -5' |
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8650 | 5' | -46.1 | NC_002229.2 | + | 6914 | 0.66 | 0.999992 |
Target: 5'- -aCCCCCGAG---GGAAGGAAaaaGUGc -3' miRNA: 3'- ggGGGGGUUUuuuUUUUCCUUgg-CAC- -5' |
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8650 | 5' | -46.1 | NC_002229.2 | + | 9732 | 0.76 | 0.950326 |
Target: 5'- gCCCCCCCAGAAAGAauaaucacugcuucGAAcGGAGCuCGa- -3' miRNA: 3'- -GGGGGGGUUUUUUU--------------UUU-CCUUG-GCac -5' |
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8650 | 5' | -46.1 | NC_002229.2 | + | 10841 | 0.67 | 0.999951 |
Target: 5'- cCCCCCCCAcaaaaaaaaacaaaaAAAAAAAacugucuuauAAGGAGCa-UGg -3' miRNA: 3'- -GGGGGGGU---------------UUUUUUU----------UUCCUUGgcAC- -5' |
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8650 | 5' | -46.1 | NC_002229.2 | + | 12428 | 0.71 | 0.996358 |
Target: 5'- gCUCCCCAGGGuGGAAAAGGGGCgGa- -3' miRNA: 3'- gGGGGGGUUUU-UUUUUUCCUUGgCac -5' |
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8650 | 5' | -46.1 | NC_002229.2 | + | 32160 | 0.69 | 0.999335 |
Target: 5'- gCCCCCCAGccuGGGAuAGGugagacCCGUGu -3' miRNA: 3'- gGGGGGGUUuu-UUUUuUCCuu----GGCAC- -5' |
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8650 | 5' | -46.1 | NC_002229.2 | + | 39365 | 0.74 | 0.982819 |
Target: 5'- aCCCCCCCGuuuAGAAuuauGGGAACgGg- -3' miRNA: 3'- -GGGGGGGUuuuUUUUu---UCCUUGgCac -5' |
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8650 | 5' | -46.1 | NC_002229.2 | + | 45444 | 0.76 | 0.947194 |
Target: 5'- -gCCUCUAGAGAAAGAGGGGACCa-- -3' miRNA: 3'- ggGGGGGUUUUUUUUUUCCUUGGcac -5' |
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8650 | 5' | -46.1 | NC_002229.2 | + | 47848 | 0.75 | 0.970056 |
Target: 5'- gCgCCCCAGAucugauguacauGAGAGAAGGAACUGUu -3' miRNA: 3'- gGgGGGGUUU------------UUUUUUUCCUUGGCAc -5' |
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8650 | 5' | -46.1 | NC_002229.2 | + | 55727 | 0.75 | 0.970056 |
Target: 5'- gCUCCCCCAuggcccaucGAGuucuGGAAGGAACCGg- -3' miRNA: 3'- -GGGGGGGU---------UUUuu--UUUUCCUUGGCac -5' |
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8650 | 5' | -46.1 | NC_002229.2 | + | 62179 | 0.67 | 0.999959 |
Target: 5'- uCCCCCaCCAGu------GGGuucAACCGUGa -3' miRNA: 3'- -GGGGG-GGUUuuuuuuuUCC---UUGGCAC- -5' |
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8650 | 5' | -46.1 | NC_002229.2 | + | 98876 | 0.71 | 0.996358 |
Target: 5'- aCCCCCCUucGAAcGAGAAGGGAaacuuGCCa-- -3' miRNA: 3'- -GGGGGGG--UUUuUUUUUUCCU-----UGGcac -5' |
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8650 | 5' | -46.1 | NC_002229.2 | + | 106174 | 0.66 | 0.999988 |
Target: 5'- gCCCCCUCugcau--AAAGGAGauCCGUa -3' miRNA: 3'- -GGGGGGGuuuuuuuUUUCCUU--GGCAc -5' |
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8650 | 5' | -46.1 | NC_002229.2 | + | 107011 | 0.66 | 0.999988 |
Target: 5'- uCCCCCCCGccuGAGAAugcucucgcuugGAAAcGGACCGc- -3' miRNA: 3'- -GGGGGGGU---UUUUU------------UUUUcCUUGGCac -5' |
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8650 | 5' | -46.1 | NC_002229.2 | + | 121714 | 0.68 | 0.999875 |
Target: 5'- uCCgaCCCCAGAGAGGGA--GAGCCGg- -3' miRNA: 3'- -GGg-GGGGUUUUUUUUUucCUUGGCac -5' |
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8650 | 5' | -46.1 | NC_002229.2 | + | 122208 | 0.68 | 0.999875 |
Target: 5'- uCCgaCCCCAGAGAGGGA--GAGCCGg- -3' miRNA: 3'- -GGg-GGGGUUUUUUUUUucCUUGGCac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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