miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8658 3' -50.4 NC_002229.2 + 84206 0.68 0.982801
Target:  5'- aCGUCGCUcg-AGCUgGCGGUa-AguGCu -3'
miRNA:   3'- -GCGGCGGuuaUCGA-UGCCGunUguCG- -5'
8658 3' -50.4 NC_002229.2 + 137968 0.67 0.989533
Target:  5'- -cCCGCCGA-GGCUGacagaGGCGaacucuucGCGGCg -3'
miRNA:   3'- gcGGCGGUUaUCGAUg----CCGUn-------UGUCG- -5'
8658 3' -50.4 NC_002229.2 + 78334 0.66 0.996792
Target:  5'- aGCCGgCGGaGGUUugGGCuuggaAGCc -3'
miRNA:   3'- gCGGCgGUUaUCGAugCCGunug-UCG- -5'
8658 3' -50.4 NC_002229.2 + 7831 0.7 0.952418
Target:  5'- uGCCGCCAGcUAGUUGagaaGCGcACAGa -3'
miRNA:   3'- gCGGCGGUU-AUCGAUgc--CGUnUGUCg -5'
8658 3' -50.4 NC_002229.2 + 151 0.86 0.249029
Target:  5'- -cCCgGCCAAUAGCUACGcGCAgACAGCc -3'
miRNA:   3'- gcGG-CGGUUAUCGAUGC-CGUnUGUCG- -5'
8658 3' -50.4 NC_002229.2 + 165928 0.68 0.988085
Target:  5'- cCGuuGCCAAacgaucccAGUa--GGCAgaGCAGCg -3'
miRNA:   3'- -GCggCGGUUa-------UCGaugCCGUn-UGUCG- -5'
8658 3' -50.4 NC_002229.2 + 138586 1.12 0.006727
Target:  5'- cCGCCGCCAAUAGCUACGGCAnACAGCc -3'
miRNA:   3'- -GCGGCGGUUAUCGAUGCCGUnUGUCG- -5'
8658 3' -50.4 NC_002229.2 + 138560 0.86 0.249029
Target:  5'- -cCCgGCCAAUAGCUACGcGCAgACAGCc -3'
miRNA:   3'- gcGG-CGGUUAUCGAUGC-CGUnUGUCG- -5'
8658 3' -50.4 NC_002229.2 + 106628 0.68 0.988085
Target:  5'- aCGauaUGCCAuuGUGGCUAUGuuGCAaGCAGa -3'
miRNA:   3'- -GCg--GCGGU--UAUCGAUGC--CGUnUGUCg -5'
8658 3' -50.4 NC_002229.2 + 137895 0.69 0.973227
Target:  5'- gCGCCGCUcggGGCUAcCGGgGuccguccGCGGCc -3'
miRNA:   3'- -GCGGCGGuuaUCGAU-GCCgUn------UGUCG- -5'
8658 3' -50.4 NC_002229.2 + 164568 0.69 0.967207
Target:  5'- gGCCGaCCGGagcgugGGCUAUGG---GCAGCg -3'
miRNA:   3'- gCGGC-GGUUa-----UCGAUGCCgunUGUCG- -5'
8658 3' -50.4 NC_002229.2 + 63628 0.7 0.963862
Target:  5'- uGCaGCCGAUAGaUUACuuuuagggGGUAggGCAGCg -3'
miRNA:   3'- gCGgCGGUUAUC-GAUG--------CCGUn-UGUCG- -5'
8658 3' -50.4 NC_002229.2 + 130881 0.7 0.952418
Target:  5'- uGCCGCCAGcUAGUUGagaaGCGcACAGa -3'
miRNA:   3'- gCGGCGGUU-AUCGAUgc--CGUnUGUCg -5'
8658 3' -50.4 NC_002229.2 + 14175 0.7 0.948117
Target:  5'- cCGCCggGCCAAcAGg-AUGGCAucgGCAGCu -3'
miRNA:   3'- -GCGG--CGGUUaUCgaUGCCGUn--UGUCG- -5'
8658 3' -50.4 NC_002229.2 + 71174 0.74 0.845173
Target:  5'- gGCCGCCugcuGCUuauccagaagaACGGCAaucucgucGCAGCu -3'
miRNA:   3'- gCGGCGGuuauCGA-----------UGCCGUn-------UGUCG- -5'
8658 3' -50.4 NC_002229.2 + 49275 0.74 0.834176
Target:  5'- uGUCGCguucauaugaacgaCAAUgAGCUugGGUAuuGCAGCu -3'
miRNA:   3'- gCGGCG--------------GUUA-UCGAugCCGUn-UGUCG- -5'
8658 3' -50.4 NC_002229.2 + 1024 0.75 0.801116
Target:  5'- gGCCGCggacggacccCGGUAGCcccgaGCGGCGccCAGCg -3'
miRNA:   3'- gCGGCG----------GUUAUCGa----UGCCGUnuGUCG- -5'
8658 3' -50.4 NC_002229.2 + 164633 0.75 0.791775
Target:  5'- aGaCUGCUcgGGUGGCUGCGGgAgggGCAGCg -3'
miRNA:   3'- gC-GGCGG--UUAUCGAUGCCgUn--UGUCG- -5'
8658 3' -50.4 NC_002229.2 + 59562 0.75 0.766791
Target:  5'- aCGCCGgCAucacuggugcgguguAUaccAGCUACGGCGc-UAGCa -3'
miRNA:   3'- -GCGGCgGU---------------UA---UCGAUGCCGUnuGUCG- -5'
8658 3' -50.4 NC_002229.2 + 167143 0.75 0.762865
Target:  5'- gGCUGCUAAU-GUUACGGCa-GCAcGCc -3'
miRNA:   3'- gCGGCGGUUAuCGAUGCCGunUGU-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.