Results 21 - 40 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8658 | 3' | -50.4 | NC_002229.2 | + | 164365 | 0.71 | 0.93677 |
Target: 5'- cCGCUGCCcAUAGCccacgcuccgguCGGCcuggACAGCa -3' miRNA: 3'- -GCGGCGGuUAUCGau----------GCCGun--UGUCG- -5' |
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8658 | 3' | -50.4 | NC_002229.2 | + | 18462 | 0.71 | 0.943566 |
Target: 5'- gGCUGCCAgagGUGGUU-CGGCGcAUcGCu -3' miRNA: 3'- gCGGCGGU---UAUCGAuGCCGUnUGuCG- -5' |
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8658 | 3' | -50.4 | NC_002229.2 | + | 14175 | 0.7 | 0.948117 |
Target: 5'- cCGCCggGCCAAcAGg-AUGGCAucgGCAGCu -3' miRNA: 3'- -GCGG--CGGUUaUCgaUGCCGUn--UGUCG- -5' |
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8658 | 3' | -50.4 | NC_002229.2 | + | 137667 | 0.7 | 0.948117 |
Target: 5'- uCGgCGCCug-GGCgcCGGCAcgGCcGCg -3' miRNA: 3'- -GCgGCGGuuaUCGauGCCGUn-UGuCG- -5' |
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8658 | 3' | -50.4 | NC_002229.2 | + | 7831 | 0.7 | 0.952418 |
Target: 5'- uGCCGCCAGcUAGUUGagaaGCGcACAGa -3' miRNA: 3'- gCGGCGGUU-AUCGAUgc--CGUnUGUCg -5' |
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8658 | 3' | -50.4 | NC_002229.2 | + | 91772 | 0.7 | 0.952418 |
Target: 5'- -aCCGCgAucGUAGgUugGGUAuuGCAGCc -3' miRNA: 3'- gcGGCGgU--UAUCgAugCCGUn-UGUCG- -5' |
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8658 | 3' | -50.4 | NC_002229.2 | + | 130881 | 0.7 | 0.952418 |
Target: 5'- uGCCGCCAGcUAGUUGagaaGCGcACAGa -3' miRNA: 3'- gCGGCGGUU-AUCGAUgc--CGUnUGUCg -5' |
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8658 | 3' | -50.4 | NC_002229.2 | + | 63628 | 0.7 | 0.963862 |
Target: 5'- uGCaGCCGAUAGaUUACuuuuagggGGUAggGCAGCg -3' miRNA: 3'- gCGgCGGUUAUC-GAUG--------CCGUn-UGUCG- -5' |
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8658 | 3' | -50.4 | NC_002229.2 | + | 148046 | 0.69 | 0.967207 |
Target: 5'- gGCCGaCCGGagcgugGGCUAUGG---GCAGCg -3' miRNA: 3'- gCGGC-GGUUa-----UCGAUGCCgunUGUCG- -5' |
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8658 | 3' | -50.4 | NC_002229.2 | + | 164568 | 0.69 | 0.967207 |
Target: 5'- gGCCGaCCGGagcgugGGCUAUGG---GCAGCg -3' miRNA: 3'- gCGGC-GGUUa-----UCGAUGCCgunUGUCG- -5' |
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8658 | 3' | -50.4 | NC_002229.2 | + | 137895 | 0.69 | 0.973227 |
Target: 5'- gCGCCGCUcggGGCUAcCGGgGuccguccGCGGCc -3' miRNA: 3'- -GCGGCGGuuaUCGAU-GCCgUn------UGUCG- -5' |
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8658 | 3' | -50.4 | NC_002229.2 | + | 68306 | 0.69 | 0.973227 |
Target: 5'- gCGUCGCauauauAUAGCUAuCGGUccGCcGCa -3' miRNA: 3'- -GCGGCGgu----UAUCGAU-GCCGunUGuCG- -5' |
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8658 | 3' | -50.4 | NC_002229.2 | + | 817 | 0.69 | 0.973227 |
Target: 5'- gCGCCGCUcggGGCUAcCGGgGuccguccGCGGCc -3' miRNA: 3'- -GCGGCGGuuaUCGAU-GCCgUn------UGUCG- -5' |
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8658 | 3' | -50.4 | NC_002229.2 | + | 43736 | 0.69 | 0.978404 |
Target: 5'- cCGUCgGCCGAUauaugaaugAGUggGCGGCAauCAGUa -3' miRNA: 3'- -GCGG-CGGUUA---------UCGa-UGCCGUnuGUCG- -5' |
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8658 | 3' | -50.4 | NC_002229.2 | + | 84206 | 0.68 | 0.982801 |
Target: 5'- aCGUCGCUcg-AGCUgGCGGUa-AguGCu -3' miRNA: 3'- -GCGGCGGuuaUCGA-UGCCGunUguCG- -5' |
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8658 | 3' | -50.4 | NC_002229.2 | + | 166913 | 0.68 | 0.982801 |
Target: 5'- gGCCGCgGAgAGCgcaGGag-GCAGCg -3' miRNA: 3'- gCGGCGgUUaUCGaugCCgunUGUCG- -5' |
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8658 | 3' | -50.4 | NC_002229.2 | + | 173344 | 0.68 | 0.984728 |
Target: 5'- uGCCGCCAAacuuguGCcaaACGGaCGggUAGCg -3' miRNA: 3'- gCGGCGGUUau----CGa--UGCC-GUnuGUCG- -5' |
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8658 | 3' | -50.4 | NC_002229.2 | + | 139270 | 0.68 | 0.984728 |
Target: 5'- uGCCGCCAAacuuguGCcaaACGGaCGggUAGCg -3' miRNA: 3'- gCGGCGGUUau----CGa--UGCC-GUnuGUCG- -5' |
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8658 | 3' | -50.4 | NC_002229.2 | + | 153369 | 0.68 | 0.986486 |
Target: 5'- uGCUGCauuccccuUAGUAGCgACGGCAcgACAu- -3' miRNA: 3'- gCGGCG--------GUUAUCGaUGCCGUn-UGUcg -5' |
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8658 | 3' | -50.4 | NC_002229.2 | + | 106628 | 0.68 | 0.988085 |
Target: 5'- aCGauaUGCCAuuGUGGCUAUGuuGCAaGCAGa -3' miRNA: 3'- -GCg--GCGGU--UAUCGAUGC--CGUnUGUCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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