miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8675 3' -39.6 NC_002229.2 + 39697 0.67 1
Target:  5'- uGCAUGUAuguGGUAACugAUCAUUUGg -3'
miRNA:   3'- cCGUAUAUu--UUGUUGugUGGUAAACg -5'
8675 3' -39.6 NC_002229.2 + 76343 0.67 1
Target:  5'- uGGuCAcAUGGGGCAGC-UAUCGUUUGUa -3'
miRNA:   3'- -CC-GUaUAUUUUGUUGuGUGGUAAACG- -5'
8675 3' -39.6 NC_002229.2 + 110582 0.68 1
Target:  5'- -cCAUAUAAAACAGCACAgaaaacCCAgaUGa -3'
miRNA:   3'- ccGUAUAUUUUGUUGUGU------GGUaaACg -5'
8675 3' -39.6 NC_002229.2 + 105409 0.68 1
Target:  5'- -cCAUAUGGAugGACACACUAc---- -3'
miRNA:   3'- ccGUAUAUUUugUUGUGUGGUaaacg -5'
8675 3' -39.6 NC_002229.2 + 34434 0.66 1
Target:  5'- cGCuUGUAGucuaguuAACGAuuCACACCAUuUUGCa -3'
miRNA:   3'- cCGuAUAUU-------UUGUU--GUGUGGUA-AACG- -5'
8675 3' -39.6 NC_002229.2 + 125499 0.67 1
Target:  5'- aGCAUAUAAGA--ACGCAUUG-UUGCa -3'
miRNA:   3'- cCGUAUAUUUUguUGUGUGGUaAACG- -5'
8675 3' -39.6 NC_002229.2 + 90025 0.68 1
Target:  5'- uGGCAg--AAAAUGuguCACGCCAUgucaauucuacUUGCa -3'
miRNA:   3'- -CCGUauaUUUUGUu--GUGUGGUA-----------AACG- -5'
8675 3' -39.6 NC_002229.2 + 142369 0.66 1
Target:  5'- gGGUgaGUAUAAAACAacgauagACACAUCAUcgGg -3'
miRNA:   3'- -CCG--UAUAUUUUGU-------UGUGUGGUAaaCg -5'
8675 3' -39.6 NC_002229.2 + 119062 0.69 1
Target:  5'- aGGCAguu--GACuAACAUGCCAUgcGCu -3'
miRNA:   3'- -CCGUauauuUUG-UUGUGUGGUAaaCG- -5'
8675 3' -39.6 NC_002229.2 + 19724 0.67 1
Target:  5'- gGGC-UAUAGAugGCAGCACGCauccaguaguacccgUGUUUGUa -3'
miRNA:   3'- -CCGuAUAUUU--UGUUGUGUG---------------GUAAACG- -5'
8675 3' -39.6 NC_002229.2 + 57815 0.66 1
Target:  5'- cGGCAgAUGAGACuuuuuuGGCACAUg--UUGCu -3'
miRNA:   3'- -CCGUaUAUUUUG------UUGUGUGguaAACG- -5'
8675 3' -39.6 NC_002229.2 + 137845 0.67 1
Target:  5'- cGCGUGUGGGA--GCgACGCCGUccGCg -3'
miRNA:   3'- cCGUAUAUUUUguUG-UGUGGUAaaCG- -5'
8675 3' -39.6 NC_002229.2 + 151438 0.67 1
Target:  5'- aGGCAUuguAGACGAUGUGCCAUgucugGCa -3'
miRNA:   3'- -CCGUAuauUUUGUUGUGUGGUAaa---CG- -5'
8675 3' -39.6 NC_002229.2 + 143714 0.68 1
Target:  5'- aGGCGUGUuuccauACGCGCCAUaaacagcUGCu -3'
miRNA:   3'- -CCGUAUAuuuuguUGUGUGGUAa------ACG- -5'
8675 3' -39.6 NC_002229.2 + 166370 0.68 1
Target:  5'- cGGCAUGU---GCAccccCACCAggUGCa -3'
miRNA:   3'- -CCGUAUAuuuUGUugu-GUGGUaaACG- -5'
8675 3' -39.6 NC_002229.2 + 56786 0.69 1
Target:  5'- cGGCAUu----GCuuuuACuuCACCGUUUGCu -3'
miRNA:   3'- -CCGUAuauuuUGu---UGu-GUGGUAAACG- -5'
8675 3' -39.6 NC_002229.2 + 97050 0.67 1
Target:  5'- cGGCGc-UAAAGCGAUAgcgGCCAcUUGCa -3'
miRNA:   3'- -CCGUauAUUUUGUUGUg--UGGUaAACG- -5'
8675 3' -39.6 NC_002229.2 + 49250 0.69 1
Target:  5'- aGCuuggGUAuuGCAGCucgucauugaACGCCAUUUGUg -3'
miRNA:   3'- cCGua--UAUuuUGUUG----------UGUGGUAAACG- -5'
8675 3' -39.6 NC_002229.2 + 8772 0.79 0.998357
Target:  5'- uGCAUGUGGAACAcgAUugGCCGUUguaGCa -3'
miRNA:   3'- cCGUAUAUUUUGU--UGugUGGUAAa--CG- -5'
8675 3' -39.6 NC_002229.2 + 21596 0.69 1
Target:  5'- aGGCcuuaguuUAGAACGAguaGCCAUUUGCu -3'
miRNA:   3'- -CCGuau----AUUUUGUUgugUGGUAAACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.