miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8675 3' -39.6 NC_002229.2 + 66390 0.72 1
Target:  5'- aGGCAUAUGGuucuacugccAGCGACAgggUAUgAUUUGCa -3'
miRNA:   3'- -CCGUAUAUU----------UUGUUGU---GUGgUAAACG- -5'
8675 3' -39.6 NC_002229.2 + 66561 0.75 0.999987
Target:  5'- cGGCAUAUGuccaguauuAGCGuuuuuauccagGCGCACCAUcaUUGCc -3'
miRNA:   3'- -CCGUAUAUu--------UUGU-----------UGUGUGGUA--AACG- -5'
8675 3' -39.6 NC_002229.2 + 67580 0.7 1
Target:  5'- aGCAUA--AAugGGCAgCACCAcgUGCa -3'
miRNA:   3'- cCGUAUauUUugUUGU-GUGGUaaACG- -5'
8675 3' -39.6 NC_002229.2 + 72788 0.79 0.999123
Target:  5'- cGCAUGUAGGACAACAucCACCAa---- -3'
miRNA:   3'- cCGUAUAUUUUGUUGU--GUGGUaaacg -5'
8675 3' -39.6 NC_002229.2 + 76343 0.67 1
Target:  5'- uGGuCAcAUGGGGCAGC-UAUCGUUUGUa -3'
miRNA:   3'- -CC-GUaUAUUUUGUUGuGUGGUAAACG- -5'
8675 3' -39.6 NC_002229.2 + 86346 0.66 1
Target:  5'- gGGCAUAUAGGACAgGCAUguauaguCCG--UGUa -3'
miRNA:   3'- -CCGUAUAUUUUGU-UGUGu------GGUaaACG- -5'
8675 3' -39.6 NC_002229.2 + 90025 0.68 1
Target:  5'- uGGCAg--AAAAUGuguCACGCCAUgucaauucuacUUGCa -3'
miRNA:   3'- -CCGUauaUUUUGUu--GUGUGGUA-----------AACG- -5'
8675 3' -39.6 NC_002229.2 + 94482 0.72 1
Target:  5'- uGCAgu---GAUAGgGCACCAUUUGUg -3'
miRNA:   3'- cCGUauauuUUGUUgUGUGGUAAACG- -5'
8675 3' -39.6 NC_002229.2 + 95430 0.69 1
Target:  5'- aGCAgagAUGAAGCAAUACACguagaagCAUcUUGCu -3'
miRNA:   3'- cCGUa--UAUUUUGUUGUGUG-------GUA-AACG- -5'
8675 3' -39.6 NC_002229.2 + 97050 0.67 1
Target:  5'- cGGCGc-UAAAGCGAUAgcgGCCAcUUGCa -3'
miRNA:   3'- -CCGUauAUUUUGUUGUg--UGGUaAACG- -5'
8675 3' -39.6 NC_002229.2 + 97992 0.71 1
Target:  5'- cGGacugAUGAuACAGgGCACgGUUUGCg -3'
miRNA:   3'- -CCgua-UAUUuUGUUgUGUGgUAAACG- -5'
8675 3' -39.6 NC_002229.2 + 103620 0.66 1
Target:  5'- gGGCGUuggcauACAACGCugCAUg--- -3'
miRNA:   3'- -CCGUAuauuu-UGUUGUGugGUAaacg -5'
8675 3' -39.6 NC_002229.2 + 105409 0.68 1
Target:  5'- -cCAUAUGGAugGACACACUAc---- -3'
miRNA:   3'- ccGUAUAUUUugUUGUGUGGUaaacg -5'
8675 3' -39.6 NC_002229.2 + 110582 0.68 1
Target:  5'- -cCAUAUAAAACAGCACAgaaaacCCAgaUGa -3'
miRNA:   3'- ccGUAUAUUUUGUUGUGU------GGUaaACg -5'
8675 3' -39.6 NC_002229.2 + 112056 0.66 1
Target:  5'- cGGUAUAUAAuuguAugAAaACGCCAUUcaUGUa -3'
miRNA:   3'- -CCGUAUAUU----UugUUgUGUGGUAA--ACG- -5'
8675 3' -39.6 NC_002229.2 + 119062 0.69 1
Target:  5'- aGGCAguu--GACuAACAUGCCAUgcGCu -3'
miRNA:   3'- -CCGUauauuUUG-UUGUGUGGUAaaCG- -5'
8675 3' -39.6 NC_002229.2 + 121027 0.72 1
Target:  5'- uGGCAUAUcugucgaucGAAGugcCAACACAgCCAgUUGCa -3'
miRNA:   3'- -CCGUAUA---------UUUU---GUUGUGU-GGUaAACG- -5'
8675 3' -39.6 NC_002229.2 + 121548 0.77 0.999842
Target:  5'- uGCAUAUAAAAUAAUAUGCCAUa--- -3'
miRNA:   3'- cCGUAUAUUUUGUUGUGUGGUAaacg -5'
8675 3' -39.6 NC_002229.2 + 122042 0.75 0.999974
Target:  5'- uGCAUAUGAAAUAAUAUGCCAca-GCc -3'
miRNA:   3'- cCGUAUAUUUUGUUGUGUGGUaaaCG- -5'
8675 3' -39.6 NC_002229.2 + 125499 0.67 1
Target:  5'- aGCAUAUAAGA--ACGCAUUG-UUGCa -3'
miRNA:   3'- cCGUAUAUUUUguUGUGUGGUaAACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.