miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8675 3' -39.6 NC_002229.2 + 866 0.67 1
Target:  5'- cGCGUGUGGGA--GCgACGCCGUccGCg -3'
miRNA:   3'- cCGUAUAUUUUguUG-UGUGGUAaaCG- -5'
8675 3' -39.6 NC_002229.2 + 2933 0.69 1
Target:  5'- gGGCGUAUAuAGCGcaaGCGCGCagg--GCu -3'
miRNA:   3'- -CCGUAUAUuUUGU---UGUGUGguaaaCG- -5'
8675 3' -39.6 NC_002229.2 + 8772 0.79 0.998357
Target:  5'- uGCAUGUGGAACAcgAUugGCCGUUguaGCa -3'
miRNA:   3'- cCGUAUAUUUUGU--UGugUGGUAAa--CG- -5'
8675 3' -39.6 NC_002229.2 + 14942 0.66 1
Target:  5'- cGCAUAUAGAuCGAaccUACACC---UGCa -3'
miRNA:   3'- cCGUAUAUUUuGUU---GUGUGGuaaACG- -5'
8675 3' -39.6 NC_002229.2 + 15255 0.68 1
Target:  5'- uGGCAUuaGUGGGGCGAUAUGgCAg--GCa -3'
miRNA:   3'- -CCGUA--UAUUUUGUUGUGUgGUaaaCG- -5'
8675 3' -39.6 NC_002229.2 + 19724 0.67 1
Target:  5'- gGGC-UAUAGAugGCAGCACGCauccaguaguacccgUGUUUGUa -3'
miRNA:   3'- -CCGuAUAUUU--UGUUGUGUG---------------GUAAACG- -5'
8675 3' -39.6 NC_002229.2 + 20374 0.67 1
Target:  5'- aGGCAaGUAAuaaAACACAUCua-UGCa -3'
miRNA:   3'- -CCGUaUAUUuugUUGUGUGGuaaACG- -5'
8675 3' -39.6 NC_002229.2 + 20479 0.66 1
Target:  5'- aGGCAcAUAAuaaAACACAUCua-UGCa -3'
miRNA:   3'- -CCGUaUAUUuugUUGUGUGGuaaACG- -5'
8675 3' -39.6 NC_002229.2 + 21596 0.69 1
Target:  5'- aGGCcuuaguuUAGAACGAguaGCCAUUUGCu -3'
miRNA:   3'- -CCGuau----AUUUUGUUgugUGGUAAACG- -5'
8675 3' -39.6 NC_002229.2 + 34434 0.66 1
Target:  5'- cGCuUGUAGucuaguuAACGAuuCACACCAUuUUGCa -3'
miRNA:   3'- cCGuAUAUU-------UUGUU--GUGUGGUA-AACG- -5'
8675 3' -39.6 NC_002229.2 + 35216 0.74 0.999994
Target:  5'- cGGUGUGUAAAAUu-CAUACCGgcUGCu -3'
miRNA:   3'- -CCGUAUAUUUUGuuGUGUGGUaaACG- -5'
8675 3' -39.6 NC_002229.2 + 38704 0.69 1
Target:  5'- uGGCAgucacAGAAUAuGCACGuguuCCAUUUGCg -3'
miRNA:   3'- -CCGUaua--UUUUGU-UGUGU----GGUAAACG- -5'
8675 3' -39.6 NC_002229.2 + 39697 0.67 1
Target:  5'- uGCAUGUAuguGGUAACugAUCAUUUGg -3'
miRNA:   3'- cCGUAUAUu--UUGUUGugUGGUAAACg -5'
8675 3' -39.6 NC_002229.2 + 46627 0.74 0.999996
Target:  5'- aGCAUAUGuGACAAaccCACCAgcgUUGCc -3'
miRNA:   3'- cCGUAUAUuUUGUUgu-GUGGUa--AACG- -5'
8675 3' -39.6 NC_002229.2 + 49250 0.69 1
Target:  5'- aGCuuggGUAuuGCAGCucgucauugaACGCCAUUUGUg -3'
miRNA:   3'- cCGua--UAUuuUGUUG----------UGUGGUAAACG- -5'
8675 3' -39.6 NC_002229.2 + 53201 1.19 0.047139
Target:  5'- uGGCAUAUAAAACAACACACCAUUUGCu -3'
miRNA:   3'- -CCGUAUAUUUUGUUGUGUGGUAAACG- -5'
8675 3' -39.6 NC_002229.2 + 54152 0.7 1
Target:  5'- cGuCAUGUAGAuCGACAauCACCAagUUGCa -3'
miRNA:   3'- cC-GUAUAUUUuGUUGU--GUGGUa-AACG- -5'
8675 3' -39.6 NC_002229.2 + 56786 0.69 1
Target:  5'- cGGCAUu----GCuuuuACuuCACCGUUUGCu -3'
miRNA:   3'- -CCGUAuauuuUGu---UGu-GUGGUAAACG- -5'
8675 3' -39.6 NC_002229.2 + 57815 0.66 1
Target:  5'- cGGCAgAUGAGACuuuuuuGGCACAUg--UUGCu -3'
miRNA:   3'- -CCGUaUAUUUUG------UUGUGUGguaAACG- -5'
8675 3' -39.6 NC_002229.2 + 57973 0.66 1
Target:  5'- aGGCGUcgugAGGACAGCgAUACCGauggaagauaaUUUGUa -3'
miRNA:   3'- -CCGUAua--UUUUGUUG-UGUGGU-----------AAACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.