Results 1 - 20 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8675 | 3' | -39.6 | NC_002229.2 | + | 53201 | 1.19 | 0.047139 |
Target: 5'- uGGCAUAUAAAACAACACACCAUUUGCu -3' miRNA: 3'- -CCGUAUAUUUUGUUGUGUGGUAAACG- -5' |
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8675 | 3' | -39.6 | NC_002229.2 | + | 129939 | 0.79 | 0.998357 |
Target: 5'- uGCAUGUGGAACAcgAUugGCCGUUguaGCa -3' miRNA: 3'- cCGUAUAUUUUGU--UGugUGGUAAa--CG- -5' |
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8675 | 3' | -39.6 | NC_002229.2 | + | 8772 | 0.79 | 0.998357 |
Target: 5'- uGCAUGUGGAACAcgAUugGCCGUUguaGCa -3' miRNA: 3'- cCGUAUAUUUUGU--UGugUGGUAAa--CG- -5' |
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8675 | 3' | -39.6 | NC_002229.2 | + | 72788 | 0.79 | 0.999123 |
Target: 5'- cGCAUGUAGGACAACAucCACCAa---- -3' miRNA: 3'- cCGUAUAUUUUGUUGU--GUGGUaaacg -5' |
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8675 | 3' | -39.6 | NC_002229.2 | + | 121548 | 0.77 | 0.999842 |
Target: 5'- uGCAUAUAAAAUAAUAUGCCAUa--- -3' miRNA: 3'- cCGUAUAUUUUGUUGUGUGGUAaacg -5' |
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8675 | 3' | -39.6 | NC_002229.2 | + | 122042 | 0.75 | 0.999974 |
Target: 5'- uGCAUAUGAAAUAAUAUGCCAca-GCc -3' miRNA: 3'- cCGUAUAUUUUGUUGUGUGGUaaaCG- -5' |
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8675 | 3' | -39.6 | NC_002229.2 | + | 66561 | 0.75 | 0.999987 |
Target: 5'- cGGCAUAUGuccaguauuAGCGuuuuuauccagGCGCACCAUcaUUGCc -3' miRNA: 3'- -CCGUAUAUu--------UUGU-----------UGUGUGGUA--AACG- -5' |
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8675 | 3' | -39.6 | NC_002229.2 | + | 35216 | 0.74 | 0.999994 |
Target: 5'- cGGUGUGUAAAAUu-CAUACCGgcUGCu -3' miRNA: 3'- -CCGUAUAUUUUGuuGUGUGGUaaACG- -5' |
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8675 | 3' | -39.6 | NC_002229.2 | + | 46627 | 0.74 | 0.999996 |
Target: 5'- aGCAUAUGuGACAAaccCACCAgcgUUGCc -3' miRNA: 3'- cCGUAUAUuUUGUUgu-GUGGUa--AACG- -5' |
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8675 | 3' | -39.6 | NC_002229.2 | + | 167144 | 0.72 | 1 |
Target: 5'- gGGCugcuaAUGUuacGGCAGCACGCCAgucGCa -3' miRNA: 3'- -CCG-----UAUAuu-UUGUUGUGUGGUaaaCG- -5' |
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8675 | 3' | -39.6 | NC_002229.2 | + | 49250 | 0.69 | 1 |
Target: 5'- aGCuuggGUAuuGCAGCucgucauugaACGCCAUUUGUg -3' miRNA: 3'- cCGua--UAUuuUGUUG----------UGUGGUAAACG- -5' |
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8675 | 3' | -39.6 | NC_002229.2 | + | 21596 | 0.69 | 1 |
Target: 5'- aGGCcuuaguuUAGAACGAguaGCCAUUUGCu -3' miRNA: 3'- -CCGuau----AUUUUGUUgugUGGUAAACG- -5' |
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8675 | 3' | -39.6 | NC_002229.2 | + | 146244 | 0.68 | 1 |
Target: 5'- cGGCAUGU---GCAccccCACCAggUGCa -3' miRNA: 3'- -CCGUAUAuuuUGUugu-GUGGUaaACG- -5' |
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8675 | 3' | -39.6 | NC_002229.2 | + | 15255 | 0.68 | 1 |
Target: 5'- uGGCAUuaGUGGGGCGAUAUGgCAg--GCa -3' miRNA: 3'- -CCGUA--UAUUUUGUUGUGUgGUaaaCG- -5' |
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8675 | 3' | -39.6 | NC_002229.2 | + | 168900 | 0.68 | 1 |
Target: 5'- aGGCGUGUuuccauACGCGCCAUaaacagcUGCu -3' miRNA: 3'- -CCGUAUAuuuuguUGUGUGGUAa------ACG- -5' |
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8675 | 3' | -39.6 | NC_002229.2 | + | 866 | 0.67 | 1 |
Target: 5'- cGCGUGUGGGA--GCgACGCCGUccGCg -3' miRNA: 3'- cCGUAUAUUUUguUG-UGUGGUAaaCG- -5' |
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8675 | 3' | -39.6 | NC_002229.2 | + | 97050 | 0.67 | 1 |
Target: 5'- cGGCGc-UAAAGCGAUAgcgGCCAcUUGCa -3' miRNA: 3'- -CCGUauAUUUUGUUGUg--UGGUaAACG- -5' |
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8675 | 3' | -39.6 | NC_002229.2 | + | 163121 | 0.66 | 1 |
Target: 5'- gGGCAUGUcuGAUccuucauGACugGCCAagagGCg -3' miRNA: 3'- -CCGUAUAuuUUG-------UUGugUGGUaaa-CG- -5' |
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8675 | 3' | -39.6 | NC_002229.2 | + | 57815 | 0.66 | 1 |
Target: 5'- cGGCAgAUGAGACuuuuuuGGCACAUg--UUGCu -3' miRNA: 3'- -CCGUaUAUUUUG------UUGUGUGguaAACG- -5' |
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8675 | 3' | -39.6 | NC_002229.2 | + | 103620 | 0.66 | 1 |
Target: 5'- gGGCGUuggcauACAACGCugCAUg--- -3' miRNA: 3'- -CCGUAuauuu-UGUUGUGugGUAaacg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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