miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8675 3' -39.6 NC_002229.2 + 86346 0.66 1
Target:  5'- gGGCAUAUAGGACAgGCAUguauaguCCG--UGUa -3'
miRNA:   3'- -CCGUAUAUUUUGU-UGUGu------GGUaaACG- -5'
8675 3' -39.6 NC_002229.2 + 112056 0.66 1
Target:  5'- cGGUAUAUAAuuguAugAAaACGCCAUUcaUGUa -3'
miRNA:   3'- -CCGUAUAUU----UugUUgUGUGGUAA--ACG- -5'
8675 3' -39.6 NC_002229.2 + 14942 0.66 1
Target:  5'- cGCAUAUAGAuCGAaccUACACC---UGCa -3'
miRNA:   3'- cCGUAUAUUUuGUU---GUGUGGuaaACG- -5'
8675 3' -39.6 NC_002229.2 + 34434 0.66 1
Target:  5'- cGCuUGUAGucuaguuAACGAuuCACACCAUuUUGCa -3'
miRNA:   3'- cCGuAUAUU-------UUGUU--GUGUGGUA-AACG- -5'
8675 3' -39.6 NC_002229.2 + 142369 0.66 1
Target:  5'- gGGUgaGUAUAAAACAacgauagACACAUCAUcgGg -3'
miRNA:   3'- -CCG--UAUAUUUUGU-------UGUGUGGUAaaCg -5'
8675 3' -39.6 NC_002229.2 + 57815 0.66 1
Target:  5'- cGGCAgAUGAGACuuuuuuGGCACAUg--UUGCu -3'
miRNA:   3'- -CCGUaUAUUUUG------UUGUGUGguaAACG- -5'
8675 3' -39.6 NC_002229.2 + 163121 0.66 1
Target:  5'- gGGCAUGUcuGAUccuucauGACugGCCAagagGCg -3'
miRNA:   3'- -CCGUAUAuuUUG-------UUGugUGGUaaa-CG- -5'
8675 3' -39.6 NC_002229.2 + 57973 0.66 1
Target:  5'- aGGCGUcgugAGGACAGCgAUACCGauggaagauaaUUUGUa -3'
miRNA:   3'- -CCGUAua--UUUUGUUG-UGUGGU-----------AAACG- -5'
8675 3' -39.6 NC_002229.2 + 20479 0.66 1
Target:  5'- aGGCAcAUAAuaaAACACAUCua-UGCa -3'
miRNA:   3'- -CCGUaUAUUuugUUGUGUGGuaaACG- -5'
8675 3' -39.6 NC_002229.2 + 170245 0.66 1
Target:  5'- gGGUgaGUAUAAAACAacgauagACACAUCAUcgGg -3'
miRNA:   3'- -CCG--UAUAUUUUGU-------UGUGUGGUAaaCg -5'
8675 3' -39.6 NC_002229.2 + 103620 0.66 1
Target:  5'- gGGCGUuggcauACAACGCugCAUg--- -3'
miRNA:   3'- -CCGUAuauuu-UGUUGUGugGUAaacg -5'
8675 3' -39.6 NC_002229.2 + 137845 0.67 1
Target:  5'- cGCGUGUGGGA--GCgACGCCGUccGCg -3'
miRNA:   3'- cCGUAUAUUUUguUG-UGUGGUAaaCG- -5'
8675 3' -39.6 NC_002229.2 + 19724 0.67 1
Target:  5'- gGGC-UAUAGAugGCAGCACGCauccaguaguacccgUGUUUGUa -3'
miRNA:   3'- -CCGuAUAUUU--UGUUGUGUG---------------GUAAACG- -5'
8675 3' -39.6 NC_002229.2 + 167592 0.67 1
Target:  5'- aGGCGUGgAGGAgGACGC-CCAcguggGCg -3'
miRNA:   3'- -CCGUAUaUUUUgUUGUGuGGUaaa--CG- -5'
8675 3' -39.6 NC_002229.2 + 39697 0.67 1
Target:  5'- uGCAUGUAuguGGUAACugAUCAUUUGg -3'
miRNA:   3'- cCGUAUAUu--UUGUUGugUGGUAAACg -5'
8675 3' -39.6 NC_002229.2 + 125499 0.67 1
Target:  5'- aGCAUAUAAGA--ACGCAUUG-UUGCa -3'
miRNA:   3'- cCGUAUAUUUUguUGUGUGGUaAACG- -5'
8675 3' -39.6 NC_002229.2 + 151438 0.67 1
Target:  5'- aGGCAUuguAGACGAUGUGCCAUgucugGCa -3'
miRNA:   3'- -CCGUAuauUUUGUUGUGUGGUAaa---CG- -5'
8675 3' -39.6 NC_002229.2 + 866 0.67 1
Target:  5'- cGCGUGUGGGA--GCgACGCCGUccGCg -3'
miRNA:   3'- cCGUAUAUUUUguUG-UGUGGUAaaCG- -5'
8675 3' -39.6 NC_002229.2 + 20374 0.67 1
Target:  5'- aGGCAaGUAAuaaAACACAUCua-UGCa -3'
miRNA:   3'- -CCGUaUAUUuugUUGUGUGGuaaACG- -5'
8675 3' -39.6 NC_002229.2 + 145023 0.67 1
Target:  5'- aGGCGUGgAGGAgGACGC-CCAcguggGCg -3'
miRNA:   3'- -CCGUAUaUUUUgUUGUGuGGUaaa--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.