miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8679 3' -54.8 NC_002229.2 + 140234 0.66 0.965244
Target:  5'- uGGuaGGAGAGaucgGGAUCUCC-CCGa -3'
miRNA:   3'- cCCcgCCUCUUga--CUUAGAGGuGGCc -5'
8679 3' -54.8 NC_002229.2 + 172380 0.66 0.965244
Target:  5'- uGGuaGGAGAGaucgGGAUCUCC-CCGa -3'
miRNA:   3'- cCCcgCCUCUUga--CUUAGAGGuGGCc -5'
8679 3' -54.8 NC_002229.2 + 78691 0.66 0.961945
Target:  5'- gGGGGcCGGAGAGggcUUGAaAUCgggaUCCGgCGGa -3'
miRNA:   3'- -CCCC-GCCUCUU---GACU-UAG----AGGUgGCC- -5'
8679 3' -54.8 NC_002229.2 + 78475 0.66 0.961945
Target:  5'- gGGGGcCGGAGAGggcUUGAaAUCgggaUCCGgCGGa -3'
miRNA:   3'- -CCCC-GCCUCUU---GACU-UAG----AGGUgGCC- -5'
8679 3' -54.8 NC_002229.2 + 78409 0.66 0.961945
Target:  5'- gGGGGcCGGAGAGggcUUGAaAUCgggaUCCGgCGGa -3'
miRNA:   3'- -CCCC-GCCUCUU---GACU-UAG----AGGUgGCC- -5'
8679 3' -54.8 NC_002229.2 + 165962 0.66 0.954707
Target:  5'- uGGGGUGGGGGua-GAAUCUCC-CUu- -3'
miRNA:   3'- -CCCCGCCUCUugaCUUAGAGGuGGcc -5'
8679 3' -54.8 NC_002229.2 + 147218 0.66 0.954707
Target:  5'- cGGGGgGGAuugGGGCUGuAUaaaUUCgACCGGa -3'
miRNA:   3'- -CCCCgCCU---CUUGACuUA---GAGgUGGCC- -5'
8679 3' -54.8 NC_002229.2 + 146653 0.66 0.954707
Target:  5'- uGGGGUGGGGGua-GAAUCUCC-CUu- -3'
miRNA:   3'- -CCCCGCCUCUugaCUUAGAGGuGGcc -5'
8679 3' -54.8 NC_002229.2 + 165396 0.66 0.954707
Target:  5'- cGGGGgGGAuugGGGCUGuAUaaaUUCgACCGGa -3'
miRNA:   3'- -CCCCgCCU---CUUGACuUA---GAGgUGGCC- -5'
8679 3' -54.8 NC_002229.2 + 3032 0.68 0.910987
Target:  5'- aGGGGaaGGGAAUUGAAUUUCUACa-- -3'
miRNA:   3'- -CCCCgcCUCUUGACUUAGAGGUGgcc -5'
8679 3' -54.8 NC_002229.2 + 135679 0.68 0.910987
Target:  5'- aGGGGaaGGGAAUUGAAUUUCUACa-- -3'
miRNA:   3'- -CCCCgcCUCUUGACUUAGAGGUGgcc -5'
8679 3' -54.8 NC_002229.2 + 126267 0.69 0.878714
Target:  5'- aGGGGCGGAGGGCcgcgcagGggUCgCCGaCGa -3'
miRNA:   3'- -CCCCGCCUCUUGa------CuuAGaGGUgGCc -5'
8679 3' -54.8 NC_002229.2 + 12445 0.69 0.878714
Target:  5'- aGGGGCGGAGGGCcgcgcagGggUCgCCGaCGa -3'
miRNA:   3'- -CCCCGCCUCUUGa------CuuAGaGGUgGCc -5'
8679 3' -54.8 NC_002229.2 + 28621 0.69 0.871605
Target:  5'- cGGGGCGaGGGAUaGAucuuUCUCCugauACCGGu -3'
miRNA:   3'- -CCCCGCcUCUUGaCUu---AGAGG----UGGCC- -5'
8679 3' -54.8 NC_002229.2 + 57489 0.7 0.841151
Target:  5'- uGGGGCGGAugaaagugauGAAUUGAAUaUCgACCGc -3'
miRNA:   3'- -CCCCGCCU----------CUUGACUUAgAGgUGGCc -5'
8679 3' -54.8 NC_002229.2 + 125942 1.12 0.003299
Target:  5'- gGGGGCGGAGAACUGAAUCUCCACCGGu -3'
miRNA:   3'- -CCCCGCCUCUUGACUUAGAGGUGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.