miRNA display CGI

Results 1 - 8 of 8 are showing below:
Show page: 1

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
8695	3'	-51.5	NC_002229.2	+	162180	1.1	0.0073
	Target:  5'- gAACCGUGCCUUUCUCUACGCAGAUGGg -3' miRNA:   3'- -UUGGCACGGAAAGAGAUGCGUCUACC- -5'
8695	3'	-51.5	NC_002229.2	+	150434	1.1	0.0073
	Target:  5'- gAACCGUGCCUUUCUCUACGCAGAUGGg -3' miRNA:   3'- -UUGGCACGGAAAGAGAUGCGUCUACC- -5'
8695	3'	-51.5	NC_002229.2	+	150487	0.73	0.797378
	Target:  5'- gAACCGUGCCUUcCUCcGCGCaaauAGGUGc -3' miRNA:   3'- -UUGGCACGGAAaGAGaUGCG----UCUACc -5'
8695	3'	-51.5	NC_002229.2	+	162127	0.71	0.894717
	Target:  5'- gAACCGUGCCUUcCUCcGCGCAa---- -3' miRNA:   3'- -UUGGCACGGAAaGAGaUGCGUcuacc -5'
8695	3'	-51.5	NC_002229.2	+	7881	0.7	0.919887
	Target:  5'- aAACCGUGCCgacugcgUUUUUAUGUGGggGGg -3' miRNA:   3'- -UUGGCACGGaa-----AGAGAUGCGUCuaCC- -5'
8695	3'	-51.5	NC_002229.2	+	130830	0.7	0.919887
	Target:  5'- aAACCGUGCCgacugcgUUUUUAUGUGGggGGg -3' miRNA:   3'- -UUGGCACGGaa-----AGAGAUGCGUCuaCC- -5'
8695	3'	-51.5	NC_002229.2	+	137933	0.68	0.96186
	Target:  5'- cGCuCGaGCCcggUCcCUGCGCAGGUGGu -3' miRNA:   3'- uUG-GCaCGGaa-AGaGAUGCGUCUACC- -5'
8695	3'	-51.5	NC_002229.2	+	779	0.68	0.96186
	Target:  5'- cGCuCGaGCCcggUCcCUGCGCAGGUGGu -3' miRNA:   3'- uUG-GCaCGGaa-AGaGAUGCGUCUACC- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home