miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8695 3' -51.5 NC_002229.2 + 162180 1.1 0.0073
Target:  5'- gAACCGUGCCUUUCUCUACGCAGAUGGg -3'
miRNA:   3'- -UUGGCACGGAAAGAGAUGCGUCUACC- -5'
8695 3' -51.5 NC_002229.2 + 150434 1.1 0.0073
Target:  5'- gAACCGUGCCUUUCUCUACGCAGAUGGg -3'
miRNA:   3'- -UUGGCACGGAAAGAGAUGCGUCUACC- -5'
8695 3' -51.5 NC_002229.2 + 150487 0.73 0.797378
Target:  5'- gAACCGUGCCUUcCUCcGCGCaaauAGGUGc -3'
miRNA:   3'- -UUGGCACGGAAaGAGaUGCG----UCUACc -5'
8695 3' -51.5 NC_002229.2 + 162127 0.71 0.894717
Target:  5'- gAACCGUGCCUUcCUCcGCGCAa---- -3'
miRNA:   3'- -UUGGCACGGAAaGAGaUGCGUcuacc -5'
8695 3' -51.5 NC_002229.2 + 7881 0.7 0.919887
Target:  5'- aAACCGUGCCgacugcgUUUUUAUGUGGggGGg -3'
miRNA:   3'- -UUGGCACGGaa-----AGAGAUGCGUCuaCC- -5'
8695 3' -51.5 NC_002229.2 + 130830 0.7 0.919887
Target:  5'- aAACCGUGCCgacugcgUUUUUAUGUGGggGGg -3'
miRNA:   3'- -UUGGCACGGaa-----AGAGAUGCGUCuaCC- -5'
8695 3' -51.5 NC_002229.2 + 137933 0.68 0.96186
Target:  5'- cGCuCGaGCCcggUCcCUGCGCAGGUGGu -3'
miRNA:   3'- uUG-GCaCGGaa-AGaGAUGCGUCUACC- -5'
8695 3' -51.5 NC_002229.2 + 779 0.68 0.96186
Target:  5'- cGCuCGaGCCcggUCcCUGCGCAGGUGGu -3'
miRNA:   3'- uUG-GCaCGGaa-AGaGAUGCGUCUACC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.