miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8703 5' -57.9 NC_002229.2 + 139129 0.97 0.013145
Target:  5'- aACUCCGACUGCGCACGGCCUCUAa-- -3'
miRNA:   3'- -UGAGGCUGACGCGUGCCGGAGAUgua -5'
8703 5' -57.9 NC_002229.2 + 139183 1.06 0.003236
Target:  5'- aACUCCGACUGCGCACGGCCUCUACAUg -3'
miRNA:   3'- -UGAGGCUGACGCGUGCCGGAGAUGUA- -5'
8703 5' -57.9 NC_002229.2 + 143500 0.73 0.46687
Target:  5'- aACUCCG-CUGUGCGgcgcaggugcuUGGCCUUUACAa -3'
miRNA:   3'- -UGAGGCuGACGCGU-----------GCCGGAGAUGUa -5'
8703 5' -57.9 NC_002229.2 + 169114 0.67 0.799442
Target:  5'- aACUCCG-CUGUGCGgCGcaggugcuuGCCUUUACAa -3'
miRNA:   3'- -UGAGGCuGACGCGU-GC---------CGGAGAUGUa -5'
8703 5' -57.9 NC_002229.2 + 173431 1.06 0.003236
Target:  5'- aACUCCGACUGCGCACGGCCUCUACAUg -3'
miRNA:   3'- -UGAGGCUGACGCGUGCCGGAGAUGUA- -5'
8703 5' -57.9 NC_002229.2 + 173486 0.97 0.013145
Target:  5'- aACUCCGACUGCGCACGGCCUCUAa-- -3'
miRNA:   3'- -UGAGGCUGACGCGUGCCGGAGAUgua -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.