miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8730 5' -49.8 NC_002331.1 + 141911 0.69 0.98322
Target:  5'- aGCGUGUACUccGUCGcUUGAC-CGCCa -3'
miRNA:   3'- aCGCACAUGGu-UAGCcGAUUGuGUGG- -5'
8730 5' -49.8 NC_002331.1 + 145724 0.67 0.996319
Target:  5'- --aGUGaUACCAAUCGGUgcGCGguCCc -3'
miRNA:   3'- acgCAC-AUGGUUAGCCGauUGUguGG- -5'
8730 5' -49.8 NC_002331.1 + 149261 0.81 0.508379
Target:  5'- gGUGUGUuaGCCGAUUGGUacACGCACCg -3'
miRNA:   3'- aCGCACA--UGGUUAGCCGauUGUGUGG- -5'
8730 5' -49.8 NC_002331.1 + 149290 0.67 0.996873
Target:  5'- gUGgGUGUAUUAAUCaaaGCUGGCGCcauCCu -3'
miRNA:   3'- -ACgCACAUGGUUAGc--CGAUUGUGu--GG- -5'
8730 5' -49.8 NC_002331.1 + 149465 1.14 0.006585
Target:  5'- gUGCGUGUACCAAUCGGCUAACACACCg -3'
miRNA:   3'- -ACGCACAUGGUUAGCCGAUUGUGUGG- -5'
8730 5' -49.8 NC_002331.1 + 149883 0.66 0.998138
Target:  5'- aGCGaaacaguuUGUACCGAcgacaUCGaCUAcgcGCGCACCa -3'
miRNA:   3'- aCGC--------ACAUGGUU-----AGCcGAU---UGUGUGG- -5'
8730 5' -49.8 NC_002331.1 + 149945 0.71 0.961193
Target:  5'- cGUGUGUACCuAUCgacgagacgGGCU-GCACugCa -3'
miRNA:   3'- aCGCACAUGGuUAG---------CCGAuUGUGugG- -5'
8730 5' -49.8 NC_002331.1 + 151339 0.67 0.997357
Target:  5'- cGaCGUGUcCCAAgUGGCUGGCcaACCg -3'
miRNA:   3'- aC-GCACAuGGUUaGCCGAUUGugUGG- -5'
8730 5' -49.8 NC_002331.1 + 152420 0.68 0.993241
Target:  5'- aGCGUGcACCAcaacgcCGGCcggAACGCgACCg -3'
miRNA:   3'- aCGCACaUGGUua----GCCGa--UUGUG-UGG- -5'
8730 5' -49.8 NC_002331.1 + 153270 0.71 0.962622
Target:  5'- aGUGUGUGCCGuucGUCGaCUGGCcggugggugaaaagaACACCa -3'
miRNA:   3'- aCGCACAUGGU---UAGCcGAUUG---------------UGUGG- -5'
8730 5' -49.8 NC_002331.1 + 155022 0.66 0.998942
Target:  5'- cUGCGaaGUACC-AUUGGuCUGAUugACUa -3'
miRNA:   3'- -ACGCa-CAUGGuUAGCC-GAUUGugUGG- -5'
8730 5' -49.8 NC_002331.1 + 155207 0.69 0.98838
Target:  5'- aUGcCGU-UACCGAUCaGCUGAUGCugCa -3'
miRNA:   3'- -AC-GCAcAUGGUUAGcCGAUUGUGugG- -5'
8730 5' -49.8 NC_002331.1 + 169846 0.69 0.987928
Target:  5'- cGCGUcgcaGUACUAGUCGcgucuuggccguccGUUGACGCAUCu -3'
miRNA:   3'- aCGCA----CAUGGUUAGC--------------CGAUUGUGUGG- -5'
8730 5' -49.8 NC_002331.1 + 174821 0.7 0.96797
Target:  5'- aUGCGUuuUACCAuuucuuUCGGUgGACACAUCa -3'
miRNA:   3'- -ACGCAc-AUGGUu-----AGCCGaUUGUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.