miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8730 5' -49.8 NC_002331.1 + 2735 0.66 0.998942
Target:  5'- cGCGUccACCAucuUUGGUuguuUAGCACACa -3'
miRNA:   3'- aCGCAcaUGGUu--AGCCG----AUUGUGUGg -5'
8730 5' -49.8 NC_002331.1 + 11731 0.71 0.949266
Target:  5'- uUGgGUGUcggucugcugGCUAGUCGGCUAAuUACGCg -3'
miRNA:   3'- -ACgCACA----------UGGUUAGCCGAUU-GUGUGg -5'
8730 5' -49.8 NC_002331.1 + 21939 0.66 0.998942
Target:  5'- aGCGUGUACCGcauuaugGUUGGUguuuuaggguuCGCCa -3'
miRNA:   3'- aCGCACAUGGU-------UAGCCGauugu------GUGG- -5'
8730 5' -49.8 NC_002331.1 + 43016 0.66 0.998138
Target:  5'- cGC---UGCUggUCGGCcGGCACGCUc -3'
miRNA:   3'- aCGcacAUGGuuAGCCGaUUGUGUGG- -5'
8730 5' -49.8 NC_002331.1 + 43858 0.69 0.985103
Target:  5'- -cCGUGUG---GUCGGCUGGCGCggaGCCg -3'
miRNA:   3'- acGCACAUgguUAGCCGAUUGUG---UGG- -5'
8730 5' -49.8 NC_002331.1 + 51049 0.67 0.995687
Target:  5'- gGUGUGcACCAccuguUCGGCUguguaaGACuCGCCg -3'
miRNA:   3'- aCGCACaUGGUu----AGCCGA------UUGuGUGG- -5'
8730 5' -49.8 NC_002331.1 + 52341 0.66 0.998138
Target:  5'- uUGCGUuaACCAaauGUCGGCguugauGC-CGCCc -3'
miRNA:   3'- -ACGCAcaUGGU---UAGCCGau----UGuGUGG- -5'
8730 5' -49.8 NC_002331.1 + 52544 0.67 0.997357
Target:  5'- cUGUGUucggGUGCCAAUUuGCUGguACAUACUg -3'
miRNA:   3'- -ACGCA----CAUGGUUAGcCGAU--UGUGUGG- -5'
8730 5' -49.8 NC_002331.1 + 62436 0.7 0.978453
Target:  5'- gGCGacacuucgaacgGUugCAcAUCGGCUGGCgaGCACCu -3'
miRNA:   3'- aCGCa-----------CAugGU-UAGCCGAUUG--UGUGG- -5'
8730 5' -49.8 NC_002331.1 + 62815 0.66 0.99845
Target:  5'- gGCGUGcgGCgAguuuuuGUUGGC-GAUACACCa -3'
miRNA:   3'- aCGCACa-UGgU------UAGCCGaUUGUGUGG- -5'
8730 5' -49.8 NC_002331.1 + 65153 0.68 0.993241
Target:  5'- uUG-GUGUGCCAG-CGcGCgugacgugcGACGCACCg -3'
miRNA:   3'- -ACgCACAUGGUUaGC-CGa--------UUGUGUGG- -5'
8730 5' -49.8 NC_002331.1 + 65363 0.7 0.973861
Target:  5'- gUGCGUcgcacgUCAcgCGcGCUGGCACACCa -3'
miRNA:   3'- -ACGCAcau---GGUuaGC-CGAUUGUGUGG- -5'
8730 5' -49.8 NC_002331.1 + 66252 0.67 0.996768
Target:  5'- cGCGUGggcagcagguugACCAAgc-GCUAcCGCACCg -3'
miRNA:   3'- aCGCACa-----------UGGUUagcCGAUuGUGUGG- -5'
8730 5' -49.8 NC_002331.1 + 70621 0.74 0.879091
Target:  5'- gUGUGUGUGCaaaGUUGGCUAAUAUugUa -3'
miRNA:   3'- -ACGCACAUGgu-UAGCCGAUUGUGugG- -5'
8730 5' -49.8 NC_002331.1 + 86565 0.68 0.993241
Target:  5'- cGCGaaaugGUGgUAAUCGGUUGA-GCGCCg -3'
miRNA:   3'- aCGCa----CAUgGUUAGCCGAUUgUGUGG- -5'
8730 5' -49.8 NC_002331.1 + 99089 0.68 0.992215
Target:  5'- uUGUGcccaauuuuuUGUGCuCGGcagCGGCUGACaACACCa -3'
miRNA:   3'- -ACGC----------ACAUG-GUUa--GCCGAUUG-UGUGG- -5'
8730 5' -49.8 NC_002331.1 + 108798 0.66 0.998716
Target:  5'- cUGaCGUGUACCA----GCUGACGCAa- -3'
miRNA:   3'- -AC-GCACAUGGUuagcCGAUUGUGUgg -5'
8730 5' -49.8 NC_002331.1 + 110625 0.66 0.998138
Target:  5'- cGCGUGUA--AAUCGuugGAUACACCa -3'
miRNA:   3'- aCGCACAUggUUAGCcgaUUGUGUGG- -5'
8730 5' -49.8 NC_002331.1 + 111976 0.7 0.973861
Target:  5'- gGUGcUGUuguuaaacACUAAUCGGUUaaGACGCGCCu -3'
miRNA:   3'- aCGC-ACA--------UGGUUAGCCGA--UUGUGUGG- -5'
8730 5' -49.8 NC_002331.1 + 124051 0.71 0.949266
Target:  5'- cUGUGUGUACgGGUCGGagagauCAgGCCg -3'
miRNA:   3'- -ACGCACAUGgUUAGCCgauu--GUgUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.