Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8730 | 5' | -49.8 | NC_002331.1 | + | 99089 | 0.68 | 0.992215 |
Target: 5'- uUGUGcccaauuuuuUGUGCuCGGcagCGGCUGACaACACCa -3' miRNA: 3'- -ACGC----------ACAUG-GUUa--GCCGAUUG-UGUGG- -5' |
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8730 | 5' | -49.8 | NC_002331.1 | + | 111976 | 0.7 | 0.973861 |
Target: 5'- gGUGcUGUuguuaaacACUAAUCGGUUaaGACGCGCCu -3' miRNA: 3'- aCGC-ACA--------UGGUUAGCCGA--UUGUGUGG- -5' |
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8730 | 5' | -49.8 | NC_002331.1 | + | 153270 | 0.71 | 0.962622 |
Target: 5'- aGUGUGUGCCGuucGUCGaCUGGCcggugggugaaaagaACACCa -3' miRNA: 3'- aCGCACAUGGU---UAGCcGAUUG---------------UGUGG- -5' |
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8730 | 5' | -49.8 | NC_002331.1 | + | 124051 | 0.71 | 0.949266 |
Target: 5'- cUGUGUGUACgGGUCGGagagauCAgGCCg -3' miRNA: 3'- -ACGCACAUGgUUAGCCgauu--GUgUGG- -5' |
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8730 | 5' | -49.8 | NC_002331.1 | + | 70621 | 0.74 | 0.879091 |
Target: 5'- gUGUGUGUGCaaaGUUGGCUAAUAUugUa -3' miRNA: 3'- -ACGCACAUGgu-UAGCCGAUUGUGugG- -5' |
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8730 | 5' | -49.8 | NC_002331.1 | + | 149261 | 0.81 | 0.508379 |
Target: 5'- gGUGUGUuaGCCGAUUGGUacACGCACCg -3' miRNA: 3'- aCGCACA--UGGUUAGCCGauUGUGUGG- -5' |
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8730 | 5' | -49.8 | NC_002331.1 | + | 2735 | 0.66 | 0.998942 |
Target: 5'- cGCGUccACCAucuUUGGUuguuUAGCACACa -3' miRNA: 3'- aCGCAcaUGGUu--AGCCG----AUUGUGUGg -5' |
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8730 | 5' | -49.8 | NC_002331.1 | + | 108798 | 0.66 | 0.998716 |
Target: 5'- cUGaCGUGUACCA----GCUGACGCAa- -3' miRNA: 3'- -AC-GCACAUGGUuagcCGAUUGUGUgg -5' |
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8730 | 5' | -49.8 | NC_002331.1 | + | 43016 | 0.66 | 0.998138 |
Target: 5'- cGC---UGCUggUCGGCcGGCACGCUc -3' miRNA: 3'- aCGcacAUGGuuAGCCGaUUGUGUGG- -5' |
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8730 | 5' | -49.8 | NC_002331.1 | + | 52544 | 0.67 | 0.997357 |
Target: 5'- cUGUGUucggGUGCCAAUUuGCUGguACAUACUg -3' miRNA: 3'- -ACGCA----CAUGGUUAGcCGAU--UGUGUGG- -5' |
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8730 | 5' | -49.8 | NC_002331.1 | + | 145724 | 0.67 | 0.996319 |
Target: 5'- --aGUGaUACCAAUCGGUgcGCGguCCc -3' miRNA: 3'- acgCAC-AUGGUUAGCCGauUGUguGG- -5' |
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8730 | 5' | -49.8 | NC_002331.1 | + | 152420 | 0.68 | 0.993241 |
Target: 5'- aGCGUGcACCAcaacgcCGGCcggAACGCgACCg -3' miRNA: 3'- aCGCACaUGGUua----GCCGa--UUGUG-UGG- -5' |
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8730 | 5' | -49.8 | NC_002331.1 | + | 52341 | 0.66 | 0.998138 |
Target: 5'- uUGCGUuaACCAaauGUCGGCguugauGC-CGCCc -3' miRNA: 3'- -ACGCAcaUGGU---UAGCCGau----UGuGUGG- -5' |
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8730 | 5' | -49.8 | NC_002331.1 | + | 65153 | 0.68 | 0.993241 |
Target: 5'- uUG-GUGUGCCAG-CGcGCgugacgugcGACGCACCg -3' miRNA: 3'- -ACgCACAUGGUUaGC-CGa--------UUGUGUGG- -5' |
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8730 | 5' | -49.8 | NC_002331.1 | + | 66252 | 0.67 | 0.996768 |
Target: 5'- cGCGUGggcagcagguugACCAAgc-GCUAcCGCACCg -3' miRNA: 3'- aCGCACa-----------UGGUUagcCGAUuGUGUGG- -5' |
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8730 | 5' | -49.8 | NC_002331.1 | + | 110625 | 0.66 | 0.998138 |
Target: 5'- cGCGUGUA--AAUCGuugGAUACACCa -3' miRNA: 3'- aCGCACAUggUUAGCcgaUUGUGUGG- -5' |
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8730 | 5' | -49.8 | NC_002331.1 | + | 21939 | 0.66 | 0.998942 |
Target: 5'- aGCGUGUACCGcauuaugGUUGGUguuuuaggguuCGCCa -3' miRNA: 3'- aCGCACAUGGU-------UAGCCGauugu------GUGG- -5' |
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8730 | 5' | -49.8 | NC_002331.1 | + | 51049 | 0.67 | 0.995687 |
Target: 5'- gGUGUGcACCAccuguUCGGCUguguaaGACuCGCCg -3' miRNA: 3'- aCGCACaUGGUu----AGCCGA------UUGuGUGG- -5' |
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8730 | 5' | -49.8 | NC_002331.1 | + | 141911 | 0.69 | 0.98322 |
Target: 5'- aGCGUGUACUccGUCGcUUGAC-CGCCa -3' miRNA: 3'- aCGCACAUGGu-UAGCcGAUUGuGUGG- -5' |
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8730 | 5' | -49.8 | NC_002331.1 | + | 149465 | 1.14 | 0.006585 |
Target: 5'- gUGCGUGUACCAAUCGGCUAACACACCg -3' miRNA: 3'- -ACGCACAUGGUUAGCCGAUUGUGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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