Results 1 - 4 of 4 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
8759 | 5' | -55.4 | NC_002363.1 | + | 3518 | 0.72 | 0.056495 |
Target: 5'- uGCGCCGUGUGGUuUGACUUACUg--- -3' miRNA: 3'- -UGUGGCGCGCCAcACUGAAUGGagcu -5' |
|||||||
8759 | 5' | -55.4 | NC_002363.1 | + | 3221 | 0.74 | 0.040173 |
Target: 5'- aAUACgGCGCGaUGUGGCUUAUCUCa- -3' miRNA: 3'- -UGUGgCGCGCcACACUGAAUGGAGcu -5' |
|||||||
8759 | 5' | -55.4 | NC_002363.1 | + | 4665 | 0.89 | 0.002332 |
Target: 5'- cACACCGCGCGGUGUGACa-ACCUCa- -3' miRNA: 3'- -UGUGGCGCGCCACACUGaaUGGAGcu -5' |
|||||||
8759 | 5' | -55.4 | NC_002363.1 | + | 4644 | 1.08 | 5.2e-05 |
Target: 5'- cACACCGCGCGGUGUGACUUACCUCGAu -3' miRNA: 3'- -UGUGGCGCGCCACACUGAAUGGAGCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home