miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8772 3' -53.1 NC_002371.2 + 16224 0.66 0.768967
Target:  5'- --uUugCUCCaGAUGCaaGGAAUUGCCGc -3'
miRNA:   3'- gucGugGAGG-CUAUG--CCUUAACGGCc -5'
8772 3' -53.1 NC_002371.2 + 33964 0.66 0.758473
Target:  5'- gAGCGCCaUUCaGGUuguugagagaGGGAUUGCCGGc -3'
miRNA:   3'- gUCGUGG-AGG-CUAug--------CCUUAACGGCC- -5'
8772 3' -53.1 NC_002371.2 + 4431 0.66 0.747841
Target:  5'- gGGCAgCUUCGAcguauUGCGcuGAUUGCUGGg -3'
miRNA:   3'- gUCGUgGAGGCU-----AUGCc-UUAACGGCC- -5'
8772 3' -53.1 NC_002371.2 + 23991 0.67 0.737085
Target:  5'- aGGCAacUCUCCGGUAauucCGGGug-GCUGGa -3'
miRNA:   3'- gUCGU--GGAGGCUAU----GCCUuaaCGGCC- -5'
8772 3' -53.1 NC_002371.2 + 9938 0.68 0.659356
Target:  5'- aGGUGCgUCUGGUGCG--AUUGCUGGg -3'
miRNA:   3'- gUCGUGgAGGCUAUGCcuUAACGGCC- -5'
8772 3' -53.1 NC_002371.2 + 25360 0.68 0.658226
Target:  5'- gCAGCGCCUCUGcgGCGauauaaauaaccuGGcgUGCaCGGu -3'
miRNA:   3'- -GUCGUGGAGGCuaUGC-------------CUuaACG-GCC- -5'
8772 3' -53.1 NC_002371.2 + 26934 0.68 0.636728
Target:  5'- cCAGCGCCUUuguaUGGUGCGGAugacccgcGCCGc -3'
miRNA:   3'- -GUCGUGGAG----GCUAUGCCUuaa-----CGGCc -5'
8772 3' -53.1 NC_002371.2 + 26894 0.69 0.614083
Target:  5'- cCGGCAaUUCCGuauCGGAggUGCUGGa -3'
miRNA:   3'- -GUCGUgGAGGCuauGCCUuaACGGCC- -5'
8772 3' -53.1 NC_002371.2 + 26828 1.11 0.000905
Target:  5'- cCAGCACCUCCGAUACGGAAUUGCCGGa -3'
miRNA:   3'- -GUCGUGGAGGCUAUGCCUUAACGGCC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.