miRNA: 3'- -AGACGUUUAGAGCUAGUGCGGUACGA- -5'
miRNA: 3'- aGACGUUuaGAGCUA-GUGCGGUAcGA- -5'
miRNA: 3'- agaCGuuUAGAGCU----------AGUGCGGUaCGA- -5'
miRNA: 3'- aGACGUUUa---GAGCUaGUGC-GGUACGa -5'
miRNA: 3'- aGACGuuuagAGCUAGUgCGGUACGa -5'
Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 8795 | 3' | -50.2 | NC_002484.1 | + | 3187 | 1.09 | 0.003199 |
|
Target: 5'- aUCUGCAAAUCUCGAUCACGCCAUGCUc -3' miRNA: 3'- -AGACGUUUAGAGCUAGUGCGGUACGA- -5' |
|||||||
| 8795 | 3' | -50.2 | NC_002484.1 | + | 6174 | 0.66 | 0.930688 |
|
Target: 5'- cCUGUAGugCUCGAUgCGCGCCGU-CUu -3' miRNA: 3'- aGACGUUuaGAGCUA-GUGCGGUAcGA- -5' |
|||||||
| 8795 | 3' | -50.2 | NC_002484.1 | + | 17895 | 0.66 | 0.936323 |
|
Target: 5'- --gGCucGUCUCGGgccgcagagaUCACGCCGcGCUu -3' miRNA: 3'- agaCGuuUAGAGCU----------AGUGCGGUaCGA- -5' |
|||||||
| 8795 | 3' | -50.2 | NC_002484.1 | + | 25367 | 0.68 | 0.830914 |
|
Target: 5'- cUUGCGAAgcggCUCGA-CACGuUCAUGCg -3' miRNA: 3'- aGACGUUUa---GAGCUaGUGC-GGUACGa -5' |
|||||||
| 8795 | 3' | -50.2 | NC_002484.1 | + | 41916 | 0.67 | 0.890562 |
|
Target: 5'- cCUGCuugcaUCGAUCAaGUCAUGCg -3' miRNA: 3'- aGACGuuuagAGCUAGUgCGGUACGa -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home