Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
8799 | 5' | -57.9 | NC_002484.1 | + | 29595 | 0.66 | 0.534194 |
Target: 5'- aGGCGGAgaacgagGUGCUgcgcaGGUUCGCcgGCgaGGCa -3' miRNA: 3'- -CCGCCU-------UACGGa----CCGAGCGa-CGa-CUG- -5' |
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8799 | 5' | -57.9 | NC_002484.1 | + | 5321 | 0.67 | 0.483438 |
Target: 5'- aGGCGG-AUGC--GGUcgauUCGCUGCUcGGCg -3' miRNA: 3'- -CCGCCuUACGgaCCG----AGCGACGA-CUG- -5' |
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8799 | 5' | -57.9 | NC_002484.1 | + | 34597 | 0.68 | 0.443784 |
Target: 5'- cGGCGGAccauUGCCUGGagaaaGUcaugagGCUGACc -3' miRNA: 3'- -CCGCCUu---ACGGACCgag--CGa-----CGACUG- -5' |
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8799 | 5' | -57.9 | NC_002484.1 | + | 32723 | 0.7 | 0.318655 |
Target: 5'- uGGUGGGAgcaCCUGGaugagcugcgcgaugCGCUGCUGGCc -3' miRNA: 3'- -CCGCCUUac-GGACCga-------------GCGACGACUG- -5' |
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8799 | 5' | -57.9 | NC_002484.1 | + | 3576 | 0.74 | 0.187418 |
Target: 5'- cGCGGAcgGCCUGGCUC-UUGUuagauUGACc -3' miRNA: 3'- cCGCCUuaCGGACCGAGcGACG-----ACUG- -5' |
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8799 | 5' | -57.9 | NC_002484.1 | + | 45891 | 0.75 | 0.150974 |
Target: 5'- uGGgGuGAGUGCguuaUGGCUUGCUGCUGGg -3' miRNA: 3'- -CCgC-CUUACGg---ACCGAGCGACGACUg -5' |
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8799 | 5' | -57.9 | NC_002484.1 | + | 6633 | 1.11 | 0.000341 |
Target: 5'- aGGCGGAAUGCCUGGCUCGCUGCUGACu -3' miRNA: 3'- -CCGCCUUACGGACCGAGCGACGACUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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