miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8801 3' -58.6 NC_002484.1 + 6917 1.11 0.000409
Target:  5'- aACUCGCGACCCGGCCCAGUCAGAACCu -3'
miRNA:   3'- -UGAGCGCUGGGCCGGGUCAGUCUUGG- -5'
8801 3' -58.6 NC_002484.1 + 38248 0.71 0.278608
Target:  5'- aACUCGaCGACCUGGUgaugCCGGcCGGcGCCg -3'
miRNA:   3'- -UGAGC-GCUGGGCCG----GGUCaGUCuUGG- -5'
8801 3' -58.6 NC_002484.1 + 19096 0.7 0.3221
Target:  5'- cGCUCGCGAuagccgaucauCCCGGCgCCAGcgCuGGugGCCa -3'
miRNA:   3'- -UGAGCGCU-----------GGGCCG-GGUCa-GuCU--UGG- -5'
8801 3' -58.6 NC_002484.1 + 50760 0.69 0.370468
Target:  5'- uUUCGCGAUCUGcCUCGGUCgccGGGACCa -3'
miRNA:   3'- uGAGCGCUGGGCcGGGUCAG---UCUUGG- -5'
8801 3' -58.6 NC_002484.1 + 40986 0.67 0.500936
Target:  5'- cCUCGCcGCCgaGGCCCAGgcgcUCAGGgaggaagucgcaGCCg -3'
miRNA:   3'- uGAGCGcUGGg-CCGGGUC----AGUCU------------UGG- -5'
8801 3' -58.6 NC_002484.1 + 14243 0.67 0.511056
Target:  5'- uACUCGgGcagaauCUCGGCCCAccCAGGAUCg -3'
miRNA:   3'- -UGAGCgCu-----GGGCCGGGUcaGUCUUGG- -5'
8801 3' -58.6 NC_002484.1 + 317 0.67 0.515128
Target:  5'- gUUCGCGGugaccuccaggaugaUCCGGUCCGaucccGUCAGAACg -3'
miRNA:   3'- uGAGCGCU---------------GGGCCGGGU-----CAGUCUUGg -5'
8801 3' -58.6 NC_002484.1 + 14349 0.66 0.58391
Target:  5'- -aUCGgaaGAUCCGGCCCA-UCcgaugcauAGAACCg -3'
miRNA:   3'- ugAGCg--CUGGGCCGGGUcAG--------UCUUGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.