miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8821 5' -55.6 NC_002484.1 + 1177 0.66 0.674013
Target:  5'- -gGCUGUucucgugCCcccauGCCGGUCUGCa -3'
miRNA:   3'- aaCGACGuaaa---GGccu--CGGCCAGACG- -5'
8821 5' -55.6 NC_002484.1 + 5019 0.66 0.629476
Target:  5'- -aGCgGCAUUguugaCGaAGCCGGUCUcGCg -3'
miRNA:   3'- aaCGaCGUAAag---GCcUCGGCCAGA-CG- -5'
8821 5' -55.6 NC_002484.1 + 11786 0.7 0.399166
Target:  5'- -gGCcGCucagaUUCCGGAaCUGGUCUGCg -3'
miRNA:   3'- aaCGaCGua---AAGGCCUcGGCCAGACG- -5'
8821 5' -55.6 NC_002484.1 + 26813 0.71 0.371946
Target:  5'- -cGCUGCAUg-CCGGAGaaucGUCUGCa -3'
miRNA:   3'- aaCGACGUAaaGGCCUCggc-CAGACG- -5'
8821 5' -55.6 NC_002484.1 + 16984 1.1 0.000625
Target:  5'- aUUGCUGCAUUUCCGGAGCCGGUCUGCa -3'
miRNA:   3'- -AACGACGUAAAGGCCUCGGCCAGACG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.