miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8865 3' -51.4 NC_002484.1 + 40162 0.66 0.881983
Target:  5'- --cCGCCAccCUAgGCCCGGGCUgAAa -3'
miRNA:   3'- cguGCGGUuuGAU-UGGGUCCGAgUUg -5'
8865 3' -51.4 NC_002484.1 + 16256 0.67 0.857319
Target:  5'- gGCAUGCCAGGC-AAUUgAGGCaUgAGCa -3'
miRNA:   3'- -CGUGCGGUUUGaUUGGgUCCG-AgUUG- -5'
8865 3' -51.4 NC_002484.1 + 30767 0.67 0.848581
Target:  5'- ---gGCCAGGCUGaaACCCgcauuccugcuGGGCUuCAGCa -3'
miRNA:   3'- cgugCGGUUUGAU--UGGG-----------UCCGA-GUUG- -5'
8865 3' -51.4 NC_002484.1 + 8636 0.67 0.848581
Target:  5'- cCAUGCCAAGCUcuucaGACCagagCAGGCagucggUCAGCc -3'
miRNA:   3'- cGUGCGGUUUGA-----UUGG----GUCCG------AGUUG- -5'
8865 3' -51.4 NC_002484.1 + 11296 0.67 0.830383
Target:  5'- -aACGaaAGACUAgGCCCAGGuCUCGAg -3'
miRNA:   3'- cgUGCggUUUGAU-UGGGUCC-GAGUUg -5'
8865 3' -51.4 NC_002484.1 + 11849 0.68 0.815177
Target:  5'- uCAUGUCcGACUGGCugaccuuggccuuuuCCAGGCUCGAg -3'
miRNA:   3'- cGUGCGGuUUGAUUG---------------GGUCCGAGUUg -5'
8865 3' -51.4 NC_002484.1 + 41689 0.68 0.811291
Target:  5'- cGCugGCCGAGCUGcucgccgccgcGCCC-GGCa---- -3'
miRNA:   3'- -CGugCGGUUUGAU-----------UGGGuCCGaguug -5'
8865 3' -51.4 NC_002484.1 + 41744 0.68 0.801436
Target:  5'- cGCGCGCUGGcgauggcuguuGCUGACgCAGGC-CAguGCa -3'
miRNA:   3'- -CGUGCGGUU-----------UGAUUGgGUCCGaGU--UG- -5'
8865 3' -51.4 NC_002484.1 + 37237 0.68 0.791391
Target:  5'- cGCAagGCCAAACa---CCAGGC-CGGCa -3'
miRNA:   3'- -CGUg-CGGUUUGauugGGUCCGaGUUG- -5'
8865 3' -51.4 NC_002484.1 + 32218 0.68 0.781168
Target:  5'- aUACGCCAAGCUcgaagccgAGuCCCAGGCg---- -3'
miRNA:   3'- cGUGCGGUUUGA--------UU-GGGUCCGaguug -5'
8865 3' -51.4 NC_002484.1 + 35954 0.68 0.781168
Target:  5'- uGC-CGCCAAagaaGCUcauuaccaaAGCUCAGGCgCAGCa -3'
miRNA:   3'- -CGuGCGGUU----UGA---------UUGGGUCCGaGUUG- -5'
8865 3' -51.4 NC_002484.1 + 54447 0.68 0.781168
Target:  5'- aGCGaaguaGCCAAGgcGGCCCAGGC-CGAg -3'
miRNA:   3'- -CGUg----CGGUUUgaUUGGGUCCGaGUUg -5'
8865 3' -51.4 NC_002484.1 + 42175 0.69 0.760235
Target:  5'- aGCugGCCGAACUGgaaaagcaggaGCCgGuGGCUUAc- -3'
miRNA:   3'- -CGugCGGUUUGAU-----------UGGgU-CCGAGUug -5'
8865 3' -51.4 NC_002484.1 + 51800 0.69 0.73874
Target:  5'- cGCAgGCCGGggagcacacgcGCUGcCCCAGGCgcuGCg -3'
miRNA:   3'- -CGUgCGGUU-----------UGAUuGGGUCCGaguUG- -5'
8865 3' -51.4 NC_002484.1 + 40983 0.69 0.73874
Target:  5'- cGC-CGCCGAG---GCCCAGGCgcUCAGg -3'
miRNA:   3'- -CGuGCGGUUUgauUGGGUCCG--AGUUg -5'
8865 3' -51.4 NC_002484.1 + 6640 0.69 0.727813
Target:  5'- cCACGCUAGGCggaAugCCuGGCUCGcuGCu -3'
miRNA:   3'- cGUGCGGUUUGa--UugGGuCCGAGU--UG- -5'
8865 3' -51.4 NC_002484.1 + 52403 0.69 0.727813
Target:  5'- aGCugGCCGAuGCcgGACagcagggaaAGGCUCAGCg -3'
miRNA:   3'- -CGugCGGUU-UGa-UUGgg-------UCCGAGUUG- -5'
8865 3' -51.4 NC_002484.1 + 4213 0.72 0.580893
Target:  5'- uCGCGCCc-GCcGAUCCAGGuCUCGGCg -3'
miRNA:   3'- cGUGCGGuuUGaUUGGGUCC-GAGUUG- -5'
8865 3' -51.4 NC_002484.1 + 28607 0.73 0.481004
Target:  5'- cGgGCGCCAcuagcucucccugAGCUAACCC-GGCUgGGCu -3'
miRNA:   3'- -CgUGCGGU-------------UUGAUUGGGuCCGAgUUG- -5'
8865 3' -51.4 NC_002484.1 + 36920 0.75 0.411132
Target:  5'- uGC-CGCCGAACgccgAGCCCAGGaagaacgCGACg -3'
miRNA:   3'- -CGuGCGGUUUGa---UUGGGUCCga-----GUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.