miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8868 3' -55.5 NC_002484.1 + 37467 0.66 0.706157
Target:  5'- -uUCGGCCAGA-CGUcacuacccgcaaggGCAGAgAGgCCg -3'
miRNA:   3'- uuAGCUGGUCUaGCG--------------CGUCUgUCgGG- -5'
8868 3' -55.5 NC_002484.1 + 19585 0.66 0.698571
Target:  5'- --gCGAUaCGGAUCGCGauCAGcCAGCCa -3'
miRNA:   3'- uuaGCUG-GUCUAGCGC--GUCuGUCGGg -5'
8868 3' -55.5 NC_002484.1 + 36619 0.66 0.698571
Target:  5'- --gCGGCCcuGAUCGCcgGCGG-CAuGCCCg -3'
miRNA:   3'- uuaGCUGGu-CUAGCG--CGUCuGU-CGGG- -5'
8868 3' -55.5 NC_002484.1 + 54461 0.66 0.687679
Target:  5'- --aCGAuCCAGGaCGCaGCgaaguagccaAGGCGGCCCa -3'
miRNA:   3'- uuaGCU-GGUCUaGCG-CG----------UCUGUCGGG- -5'
8868 3' -55.5 NC_002484.1 + 53091 0.66 0.686586
Target:  5'- -cUCGACUcccuucaacugcgGGAUCGCcCAGGCAGUUa -3'
miRNA:   3'- uuAGCUGG-------------UCUAGCGcGUCUGUCGGg -5'
8868 3' -55.5 NC_002484.1 + 8620 0.66 0.676733
Target:  5'- ---aGACCAGAgcaG-GCAGucgguCAGCCCa -3'
miRNA:   3'- uuagCUGGUCUag-CgCGUCu----GUCGGG- -5'
8868 3' -55.5 NC_002484.1 + 3598 0.67 0.63263
Target:  5'- --cUGaACCAGuUCaugagcgcgGCGCGGACGGCCUg -3'
miRNA:   3'- uuaGC-UGGUCuAG---------CGCGUCUGUCGGG- -5'
8868 3' -55.5 NC_002484.1 + 44490 0.67 0.63263
Target:  5'- --aCGGCCAGGacgugggCgGCGCcgucagcuaccgAGACGGCCCu -3'
miRNA:   3'- uuaGCUGGUCUa------G-CGCG------------UCUGUCGGG- -5'
8868 3' -55.5 NC_002484.1 + 2429 0.67 0.621578
Target:  5'- --gCGACCAGAaCGCGCcaucugucaggcGGAUGGUCUu -3'
miRNA:   3'- uuaGCUGGUCUaGCGCG------------UCUGUCGGG- -5'
8868 3' -55.5 NC_002484.1 + 26162 0.69 0.534251
Target:  5'- --aCGAgCGGAaCG-GCAGGCAGCCa -3'
miRNA:   3'- uuaGCUgGUCUaGCgCGUCUGUCGGg -5'
8868 3' -55.5 NC_002484.1 + 54119 0.7 0.451649
Target:  5'- cAUCGACCAG-UCGgGUA-ACAGCCg -3'
miRNA:   3'- uUAGCUGGUCuAGCgCGUcUGUCGGg -5'
8868 3' -55.5 NC_002484.1 + 26577 0.74 0.259949
Target:  5'- -cUCGGCCAGcagCGCGCGGACcuuGGUCUg -3'
miRNA:   3'- uuAGCUGGUCua-GCGCGUCUG---UCGGG- -5'
8868 3' -55.5 NC_002484.1 + 49550 1.09 0.000833
Target:  5'- gAAUCGACCAGAUCGCGCAGACAGCCCu -3'
miRNA:   3'- -UUAGCUGGUCUAGCGCGUCUGUCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.