Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8879 | 3' | -56.2 | NC_002484.1 | + | 3593 | 0.66 | 0.678301 |
Target: 5'- cCAGUUCaugAGCG-CGGCGcgGACGGCCu -3' miRNA: 3'- uGUCGGGg--UUGCuGCUGUa-CUGCCGG- -5' |
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8879 | 3' | -56.2 | NC_002484.1 | + | 8230 | 0.67 | 0.624092 |
Target: 5'- cCAGCCCCuGCGGCG-CAucucUGA-GGCa -3' miRNA: 3'- uGUCGGGGuUGCUGCuGU----ACUgCCGg -5' |
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8879 | 3' | -56.2 | NC_002484.1 | + | 9320 | 0.66 | 0.689056 |
Target: 5'- cGCuGCCUgAACcACGAuCAUuGCGGCCu -3' miRNA: 3'- -UGuCGGGgUUGcUGCU-GUAcUGCCGG- -5' |
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8879 | 3' | -56.2 | NC_002484.1 | + | 9667 | 0.66 | 0.678301 |
Target: 5'- aGCAGCCUUcuUGGCuGCGcgcuUGAUGGCCc -3' miRNA: 3'- -UGUCGGGGuuGCUGcUGU----ACUGCCGG- -5' |
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8879 | 3' | -56.2 | NC_002484.1 | + | 9850 | 0.7 | 0.443961 |
Target: 5'- gGCGGCCCCAcagguaguucuccgGCGAcccCGAUAUGGuCuGCCa -3' miRNA: 3'- -UGUCGGGGU--------------UGCU---GCUGUACU-GcCGG- -5' |
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8879 | 3' | -56.2 | NC_002484.1 | + | 11426 | 0.69 | 0.506863 |
Target: 5'- cCGGCgCUCGGCGGCaucCAUGcCGGCCa -3' miRNA: 3'- uGUCG-GGGUUGCUGcu-GUACuGCCGG- -5' |
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8879 | 3' | -56.2 | NC_002484.1 | + | 15741 | 0.67 | 0.634958 |
Target: 5'- -aGGCCgCAGCGAUGACccca-GGCCc -3' miRNA: 3'- ugUCGGgGUUGCUGCUGuacugCCGG- -5' |
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8879 | 3' | -56.2 | NC_002484.1 | + | 17564 | 0.72 | 0.356408 |
Target: 5'- uACGGUCa-GACGAcCGAUAccUGACGGCCa -3' miRNA: 3'- -UGUCGGggUUGCU-GCUGU--ACUGCCGG- -5' |
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8879 | 3' | -56.2 | NC_002484.1 | + | 26373 | 0.72 | 0.32401 |
Target: 5'- cCAGCUCCugauCGAUGACcgccucGGCGGCCg -3' miRNA: 3'- uGUCGGGGuu--GCUGCUGua----CUGCCGG- -5' |
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8879 | 3' | -56.2 | NC_002484.1 | + | 28420 | 0.66 | 0.699757 |
Target: 5'- gGCGGCCgCCGGCauucuCGGCGUGA--GCCg -3' miRNA: 3'- -UGUCGG-GGUUGcu---GCUGUACUgcCGG- -5' |
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8879 | 3' | -56.2 | NC_002484.1 | + | 34764 | 0.67 | 0.602388 |
Target: 5'- -aGGUCaUCAaguacGCGGCGAUgAUGGCGGCCu -3' miRNA: 3'- ugUCGG-GGU-----UGCUGCUG-UACUGCCGG- -5' |
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8879 | 3' | -56.2 | NC_002484.1 | + | 34841 | 0.68 | 0.552956 |
Target: 5'- cGCAGCCaCuCGgcacagaucaagucgGCGAUGaguGCAUGAgGGCCa -3' miRNA: 3'- -UGUCGG-G-GU---------------UGCUGC---UGUACUgCCGG- -5' |
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8879 | 3' | -56.2 | NC_002484.1 | + | 35428 | 0.71 | 0.409124 |
Target: 5'- gAUGGCCUaguCGGCGACA--ACGGCCu -3' miRNA: 3'- -UGUCGGGguuGCUGCUGUacUGCCGG- -5' |
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8879 | 3' | -56.2 | NC_002484.1 | + | 35985 | 0.71 | 0.409124 |
Target: 5'- cGCGGCgaggaCGACGACGGCAacGCGGCUg -3' miRNA: 3'- -UGUCGgg---GUUGCUGCUGUacUGCCGG- -5' |
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8879 | 3' | -56.2 | NC_002484.1 | + | 36620 | 0.71 | 0.409124 |
Target: 5'- gGCGGCCCUGAucgcCGGCGGCAUGcccggggaAUGcGCCa -3' miRNA: 3'- -UGUCGGGGUU----GCUGCUGUAC--------UGC-CGG- -5' |
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8879 | 3' | -56.2 | NC_002484.1 | + | 38371 | 0.7 | 0.446858 |
Target: 5'- aGCuGCaCCCGgcaauACGACGACAUGcGCcGCCg -3' miRNA: 3'- -UGuCG-GGGU-----UGCUGCUGUAC-UGcCGG- -5' |
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8879 | 3' | -56.2 | NC_002484.1 | + | 40238 | 0.66 | 0.699757 |
Target: 5'- aGCAGCgauaCCgCAACGGCG-C-UGAUGGCa -3' miRNA: 3'- -UGUCG----GG-GUUGCUGCuGuACUGCCGg -5' |
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8879 | 3' | -56.2 | NC_002484.1 | + | 40547 | 0.67 | 0.624092 |
Target: 5'- cCGGCUgaCAugGGCGA--UGACGGCUc -3' miRNA: 3'- uGUCGGg-GUugCUGCUguACUGCCGG- -5' |
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8879 | 3' | -56.2 | NC_002484.1 | + | 40608 | 0.66 | 0.678301 |
Target: 5'- gGCGcGCCUCA---ACGGCAaGACGGUCa -3' miRNA: 3'- -UGU-CGGGGUugcUGCUGUaCUGCCGG- -5' |
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8879 | 3' | -56.2 | NC_002484.1 | + | 41644 | 0.68 | 0.57004 |
Target: 5'- gAUGGCCguuuaCGuCGACGACAUGAacgcaacguuUGGCCg -3' miRNA: 3'- -UGUCGGg----GUuGCUGCUGUACU----------GCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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