Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8901 | 3' | -53.5 | NC_002484.1 | + | 4358 | 0.68 | 0.729179 |
Target: 5'- aUUGCGCUGGCuUCGCGGCAuuccGCUg -3' miRNA: 3'- gGAUGCGGCCGcAGUGUUGUuac-CGG- -5' |
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8901 | 3' | -53.5 | NC_002484.1 | + | 4745 | 0.71 | 0.56555 |
Target: 5'- uCCU-CGCCGcCGUCACGcuucuCGuUGGCCa -3' miRNA: 3'- -GGAuGCGGCcGCAGUGUu----GUuACCGG- -5' |
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8901 | 3' | -53.5 | NC_002484.1 | + | 6941 | 0.7 | 0.608172 |
Target: 5'- gCCUGCGUa-GCGUcCGCAGCGAUcaacucgcgacccGGCCc -3' miRNA: 3'- -GGAUGCGgcCGCA-GUGUUGUUA-------------CCGG- -5' |
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8901 | 3' | -53.5 | NC_002484.1 | + | 9920 | 0.68 | 0.739721 |
Target: 5'- gCUGCaucuCUGGCcucCGCAGCGGUGGCUg -3' miRNA: 3'- gGAUGc---GGCCGca-GUGUUGUUACCGG- -5' |
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8901 | 3' | -53.5 | NC_002484.1 | + | 10972 | 0.67 | 0.760467 |
Target: 5'- aCCUcgGCGaucaCGGUGagCAgGGCGAUGGUCa -3' miRNA: 3'- -GGA--UGCg---GCCGCa-GUgUUGUUACCGG- -5' |
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8901 | 3' | -53.5 | NC_002484.1 | + | 12214 | 0.68 | 0.729179 |
Target: 5'- gCCUACaaGCUGGaaggcUC-CAACAGUGGCUa -3' miRNA: 3'- -GGAUG--CGGCCgc---AGuGUUGUUACCGG- -5' |
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8901 | 3' | -53.5 | NC_002484.1 | + | 13465 | 0.68 | 0.707816 |
Target: 5'- gCCgcCGCCGGgG-C-CAACAGcgGGCCu -3' miRNA: 3'- -GGauGCGGCCgCaGuGUUGUUa-CCGG- -5' |
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8901 | 3' | -53.5 | NC_002484.1 | + | 17527 | 0.67 | 0.780686 |
Target: 5'- --gACGCCGGCGUaggACGACGGagcuggaGGCg -3' miRNA: 3'- ggaUGCGGCCGCAg--UGUUGUUa------CCGg -5' |
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8901 | 3' | -53.5 | NC_002484.1 | + | 18261 | 0.66 | 0.822874 |
Target: 5'- cUCUGCGCCaGGCcagggccgggaacaUCGcCGGCAagGGCCa -3' miRNA: 3'- -GGAUGCGG-CCGc-------------AGU-GUUGUuaCCGG- -5' |
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8901 | 3' | -53.5 | NC_002484.1 | + | 18354 | 0.67 | 0.770648 |
Target: 5'- --aGCGCUGGCGaguuCAGCAGUGaCCa -3' miRNA: 3'- ggaUGCGGCCGCagu-GUUGUUACcGG- -5' |
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8901 | 3' | -53.5 | NC_002484.1 | + | 26504 | 0.7 | 0.609272 |
Target: 5'- aCCUcgacCGCgGGCGcucgcacggCACAGCAAUGGgCa -3' miRNA: 3'- -GGAu---GCGgCCGCa--------GUGUUGUUACCgG- -5' |
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8901 | 3' | -53.5 | NC_002484.1 | + | 27373 | 0.66 | 0.828345 |
Target: 5'- aCCUGCGCCacaccugCGCGGC-AUGGCUg -3' miRNA: 3'- -GGAUGCGGccgca--GUGUUGuUACCGG- -5' |
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8901 | 3' | -53.5 | NC_002484.1 | + | 33887 | 0.73 | 0.460962 |
Target: 5'- gCUACGUCGGaGUcCACAACAGcauUGGCg -3' miRNA: 3'- gGAUGCGGCCgCA-GUGUUGUU---ACCGg -5' |
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8901 | 3' | -53.5 | NC_002484.1 | + | 34912 | 0.68 | 0.729179 |
Target: 5'- --aGCGCCGGCcagACGACAcccaGGCCg -3' miRNA: 3'- ggaUGCGGCCGcagUGUUGUua--CCGG- -5' |
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8901 | 3' | -53.5 | NC_002484.1 | + | 35439 | 0.69 | 0.653303 |
Target: 5'- gCUAuuCGCCGGauggccuaGUCgGCGACAAcGGCCu -3' miRNA: 3'- gGAU--GCGGCCg-------CAG-UGUUGUUaCCGG- -5' |
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8901 | 3' | -53.5 | NC_002484.1 | + | 35550 | 0.66 | 0.809831 |
Target: 5'- --aGCGCCaGGgGUCACAAgcuUGaGCCg -3' miRNA: 3'- ggaUGCGG-CCgCAGUGUUguuAC-CGG- -5' |
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8901 | 3' | -53.5 | NC_002484.1 | + | 36615 | 0.68 | 0.739721 |
Target: 5'- cCCUGauCGCCGGCGgCAUgcccgGGgAAUGcGCCa -3' miRNA: 3'- -GGAU--GCGGCCGCaGUG-----UUgUUAC-CGG- -5' |
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8901 | 3' | -53.5 | NC_002484.1 | + | 39383 | 0.89 | 0.04211 |
Target: 5'- aCCUagagcgGCGCUGGUGUCACGuuuGCAAUGGCCg -3' miRNA: 3'- -GGA------UGCGGCCGCAGUGU---UGUUACCGG- -5' |
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8901 | 3' | -53.5 | NC_002484.1 | + | 42758 | 0.72 | 0.470991 |
Target: 5'- gCCUGcCGCCGGUGggCACGcuguGCgAGUGGCa -3' miRNA: 3'- -GGAU-GCGGCCGCa-GUGU----UG-UUACCGg -5' |
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8901 | 3' | -53.5 | NC_002484.1 | + | 43162 | 0.68 | 0.71854 |
Target: 5'- gCCUgaugGCuaCGGUGaUCAUGGCcGUGGCCg -3' miRNA: 3'- -GGA----UGcgGCCGC-AGUGUUGuUACCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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