miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8908 5' -56.8 NC_002484.1 + 431 0.66 0.706269
Target:  5'- gCCGAACuUCUGgCGGuCGGAcgGCguuaguccaaGCCGGg -3'
miRNA:   3'- -GGCUUGuAGGCgGUC-GCCU--UG----------CGGCC- -5'
8908 5' -56.8 NC_002484.1 + 13514 0.7 0.476608
Target:  5'- aCGAGCAacUCCGgCaaccauuggAGCGGuGAUGCCGGc -3'
miRNA:   3'- gGCUUGU--AGGCgG---------UCGCC-UUGCGGCC- -5'
8908 5' -56.8 NC_002484.1 + 33167 0.69 0.496449
Target:  5'- gCUGAAguUCUcaaGCCagagcaGGCGGAGCGgCCGGa -3'
miRNA:   3'- -GGCUUguAGG---CGG------UCGCCUUGC-GGCC- -5'
8908 5' -56.8 NC_002484.1 + 17408 0.69 0.516655
Target:  5'- cUCGGgccGCAUCauguaCGgCAGCGGGAUGCCGu -3'
miRNA:   3'- -GGCU---UGUAG-----GCgGUCGCCUUGCGGCc -5'
8908 5' -56.8 NC_002484.1 + 30013 0.69 0.533054
Target:  5'- aCCGAccacGCAgagCUGCggaggguggcugaGGCGGcAACGCCGGg -3'
miRNA:   3'- -GGCU----UGUa--GGCGg------------UCGCC-UUGCGGCC- -5'
8908 5' -56.8 NC_002484.1 + 54871 0.69 0.537182
Target:  5'- gCCGAGCAggaUCGCCAGCaccaGGGucaGCCaGGg -3'
miRNA:   3'- -GGCUUGUa--GGCGGUCG----CCUug-CGG-CC- -5'
8908 5' -56.8 NC_002484.1 + 38355 0.69 0.537182
Target:  5'- aCGAcgACAUgcgCCGCCGGCucGACGCCGc -3'
miRNA:   3'- gGCU--UGUA---GGCGGUCGccUUGCGGCc -5'
8908 5' -56.8 NC_002484.1 + 9763 0.68 0.547552
Target:  5'- aCUGGuACAUCC-UCAGCGGGgacGCGCCa- -3'
miRNA:   3'- -GGCU-UGUAGGcGGUCGCCU---UGCGGcc -5'
8908 5' -56.8 NC_002484.1 + 2300 0.68 0.557985
Target:  5'- aUGAACG-CCGCUauGGC-GAACGCCGa -3'
miRNA:   3'- gGCUUGUaGGCGG--UCGcCUUGCGGCc -5'
8908 5' -56.8 NC_002484.1 + 42570 0.7 0.457168
Target:  5'- cCCGAGCAgaucgCCGCCgaggAGCGGGAgaagGCCa- -3'
miRNA:   3'- -GGCUUGUa----GGCGG----UCGCCUUg---CGGcc -5'
8908 5' -56.8 NC_002484.1 + 2884 0.7 0.447608
Target:  5'- uUCGAcCAUCC---AGCGuGAACGCCGGg -3'
miRNA:   3'- -GGCUuGUAGGcggUCGC-CUUGCGGCC- -5'
8908 5' -56.8 NC_002484.1 + 6648 0.7 0.447608
Target:  5'- uCCGAugAcCaCGCUAgGCGGAAUGCCuGGc -3'
miRNA:   3'- -GGCUugUaG-GCGGU-CGCCUUGCGG-CC- -5'
8908 5' -56.8 NC_002484.1 + 49516 0.74 0.269223
Target:  5'- uCCGAACGUCCGgcgugcuuCCGgucauguuGCGGAGCGCUGu -3'
miRNA:   3'- -GGCUUGUAGGC--------GGU--------CGCCUUGCGGCc -5'
8908 5' -56.8 NC_002484.1 + 26096 0.73 0.289755
Target:  5'- gCCGAGCcagacaCCGCCGGCGG--UGCCGa -3'
miRNA:   3'- -GGCUUGua----GGCGGUCGCCuuGCGGCc -5'
8908 5' -56.8 NC_002484.1 + 36766 0.73 0.319013
Target:  5'- gCUGAGCGUgaUGCaCAGCGGcGCGCCGa -3'
miRNA:   3'- -GGCUUGUAg-GCG-GUCGCCuUGCGGCc -5'
8908 5' -56.8 NC_002484.1 + 19085 0.72 0.342376
Target:  5'- gCCGAuCAUCCcggcGCCAGCGcuGGugGCCaGGg -3'
miRNA:   3'- -GGCUuGUAGG----CGGUCGC--CUugCGG-CC- -5'
8908 5' -56.8 NC_002484.1 + 8306 0.72 0.375405
Target:  5'- aCUGGAUGUCUGCCGGCGGgaguggaucgAugGCCc- -3'
miRNA:   3'- -GGCUUGUAGGCGGUCGCC----------UugCGGcc -5'
8908 5' -56.8 NC_002484.1 + 26833 0.7 0.427902
Target:  5'- uUCG-GC-UCCGCCGGcCGGAucgcugcAUGCCGGa -3'
miRNA:   3'- -GGCuUGuAGGCGGUC-GCCU-------UGCGGCC- -5'
8908 5' -56.8 NC_002484.1 + 42764 0.7 0.447608
Target:  5'- gCCaGGGCcugCCGCCGGUGGGcACGCUGu -3'
miRNA:   3'- -GG-CUUGua-GGCGGUCGCCU-UGCGGCc -5'
8908 5' -56.8 NC_002484.1 + 36876 0.7 0.447608
Target:  5'- gCCGcgaAGCAgaagccaaggCCGCC-GCuGAGCGCCGGg -3'
miRNA:   3'- -GGC---UUGUa---------GGCGGuCGcCUUGCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.