miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8908 5' -56.8 NC_002484.1 + 431 0.66 0.706269
Target:  5'- gCCGAACuUCUGgCGGuCGGAcgGCguuaguccaaGCCGGg -3'
miRNA:   3'- -GGCUUGuAGGCgGUC-GCCU--UG----------CGGCC- -5'
8908 5' -56.8 NC_002484.1 + 937 0.66 0.665168
Target:  5'- gCCGGACGgaaaaccucgaaggcCUGCUucucGGUGGuGGCGCCGGa -3'
miRNA:   3'- -GGCUUGUa--------------GGCGG----UCGCC-UUGCGGCC- -5'
8908 5' -56.8 NC_002484.1 + 2300 0.68 0.557985
Target:  5'- aUGAACG-CCGCUauGGC-GAACGCCGa -3'
miRNA:   3'- gGCUUGUaGGCGG--UCGcCUUGCGGCc -5'
8908 5' -56.8 NC_002484.1 + 2884 0.7 0.447608
Target:  5'- uUCGAcCAUCC---AGCGuGAACGCCGGg -3'
miRNA:   3'- -GGCUuGUAGGcggUCGC-CUUGCGGCC- -5'
8908 5' -56.8 NC_002484.1 + 6648 0.7 0.447608
Target:  5'- uCCGAugAcCaCGCUAgGCGGAAUGCCuGGc -3'
miRNA:   3'- -GGCUugUaG-GCGGU-CGCCUUGCGG-CC- -5'
8908 5' -56.8 NC_002484.1 + 7717 0.66 0.695805
Target:  5'- cCCGAGCAccaUCUGCaGGCGGucGCGCa-- -3'
miRNA:   3'- -GGCUUGU---AGGCGgUCGCCu-UGCGgcc -5'
8908 5' -56.8 NC_002484.1 + 8306 0.72 0.375405
Target:  5'- aCUGGAUGUCUGCCGGCGGgaguggaucgAugGCCc- -3'
miRNA:   3'- -GGCUUGUAGGCGGUCGCC----------UugCGGcc -5'
8908 5' -56.8 NC_002484.1 + 9763 0.68 0.547552
Target:  5'- aCUGGuACAUCC-UCAGCGGGgacGCGCCa- -3'
miRNA:   3'- -GGCU-UGUAGGcGGUCGCCU---UGCGGcc -5'
8908 5' -56.8 NC_002484.1 + 10901 0.74 0.256197
Target:  5'- gCCGGugAUAUCUGCCGGCGuGAAUaCCGGc -3'
miRNA:   3'- -GGCU--UGUAGGCGGUCGC-CUUGcGGCC- -5'
8908 5' -56.8 NC_002484.1 + 11968 0.66 0.705225
Target:  5'- gUCGAGaAUCgCGCCAGCGGccugggcGGCGUCa- -3'
miRNA:   3'- -GGCUUgUAG-GCGGUCGCC-------UUGCGGcc -5'
8908 5' -56.8 NC_002484.1 + 13514 0.7 0.476608
Target:  5'- aCGAGCAacUCCGgCaaccauuggAGCGGuGAUGCCGGc -3'
miRNA:   3'- gGCUUGU--AGGCgG---------UCGCC-UUGCGGCC- -5'
8908 5' -56.8 NC_002484.1 + 17408 0.69 0.516655
Target:  5'- cUCGGgccGCAUCauguaCGgCAGCGGGAUGCCGu -3'
miRNA:   3'- -GGCU---UGUAG-----GCgGUCGCCUUGCGGCc -5'
8908 5' -56.8 NC_002484.1 + 18372 0.67 0.642816
Target:  5'- uCUGGGCG-CCGCaGGUaGAGCGCUGGc -3'
miRNA:   3'- -GGCUUGUaGGCGgUCGcCUUGCGGCC- -5'
8908 5' -56.8 NC_002484.1 + 18719 0.67 0.642816
Target:  5'- gCGAGgGUCUuucgaGCCgAGCGGGAaacCGCUGGu -3'
miRNA:   3'- gGCUUgUAGG-----CGG-UCGCCUU---GCGGCC- -5'
8908 5' -56.8 NC_002484.1 + 19085 0.72 0.342376
Target:  5'- gCCGAuCAUCCcggcGCCAGCGcuGGugGCCaGGg -3'
miRNA:   3'- -GGCUuGUAGG----CGGUCGC--CUugCGG-CC- -5'
8908 5' -56.8 NC_002484.1 + 19356 0.66 0.706269
Target:  5'- aCCGAAUAUcCCGCuCAGCGaGAGuuCCGc -3'
miRNA:   3'- -GGCUUGUA-GGCG-GUCGC-CUUgcGGCc -5'
8908 5' -56.8 NC_002484.1 + 25884 0.67 0.632153
Target:  5'- aCCGGccuguAUAUCUGCCAGCGcGcGGCGCUc- -3'
miRNA:   3'- -GGCU-----UGUAGGCGGUCGC-C-UUGCGGcc -5'
8908 5' -56.8 NC_002484.1 + 26096 0.73 0.289755
Target:  5'- gCCGAGCcagacaCCGCCGGCGG--UGCCGa -3'
miRNA:   3'- -GGCUUGua----GGCGGUCGCCuuGCGGCc -5'
8908 5' -56.8 NC_002484.1 + 26833 0.7 0.427902
Target:  5'- uUCG-GC-UCCGCCGGcCGGAucgcugcAUGCCGGa -3'
miRNA:   3'- -GGCuUGuAGGCGGUC-GCCU-------UGCGGCC- -5'
8908 5' -56.8 NC_002484.1 + 27338 0.67 0.642816
Target:  5'- gCCG-GCGuUCCGCUGGCGG-AUGuUCGGg -3'
miRNA:   3'- -GGCuUGU-AGGCGGUCGCCuUGC-GGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.