miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8908 5' -56.8 NC_002484.1 + 55504 0.66 0.685283
Target:  5'- gCCGAAcCAUCCGCgA-CGG-AC-CCGGa -3'
miRNA:   3'- -GGCUU-GUAGGCGgUcGCCuUGcGGCC- -5'
8908 5' -56.8 NC_002484.1 + 54871 0.69 0.537182
Target:  5'- gCCGAGCAggaUCGCCAGCaccaGGGucaGCCaGGg -3'
miRNA:   3'- -GGCUUGUa--GGCGGUCG----CCUug-CGG-CC- -5'
8908 5' -56.8 NC_002484.1 + 54013 0.67 0.607642
Target:  5'- -aGGACAgcgcUCUGCCAguugagcuagagccGCGGAAuaggUGCCGGa -3'
miRNA:   3'- ggCUUGU----AGGCGGU--------------CGCCUU----GCGGCC- -5'
8908 5' -56.8 NC_002484.1 + 53962 0.67 0.62149
Target:  5'- gCCG-GCGUCaCGCCcGCaGAGCaaggaGCCGGg -3'
miRNA:   3'- -GGCuUGUAG-GCGGuCGcCUUG-----CGGCC- -5'
8908 5' -56.8 NC_002484.1 + 52673 0.67 0.610836
Target:  5'- gCUGGGCGauguauUCgGCUAGCGucAUGCCGGc -3'
miRNA:   3'- -GGCUUGU------AGgCGGUCGCcuUGCGGCC- -5'
8908 5' -56.8 NC_002484.1 + 51073 0.68 0.589587
Target:  5'- aUGGugAUCCaCUcGCGGAACGCCu- -3'
miRNA:   3'- gGCUugUAGGcGGuCGCCUUGCGGcc -5'
8908 5' -56.8 NC_002484.1 + 49516 0.74 0.269223
Target:  5'- uCCGAACGUCCGgcgugcuuCCGgucauguuGCGGAGCGCUGu -3'
miRNA:   3'- -GGCUUGUAGGC--------GGU--------CGCCUUGCGGCc -5'
8908 5' -56.8 NC_002484.1 + 42764 0.7 0.447608
Target:  5'- gCCaGGGCcugCCGCCGGUGGGcACGCUGu -3'
miRNA:   3'- -GG-CUUGua-GGCGGUCGCCU-UGCGGCc -5'
8908 5' -56.8 NC_002484.1 + 42570 0.7 0.457168
Target:  5'- cCCGAGCAgaucgCCGCCgaggAGCGGGAgaagGCCa- -3'
miRNA:   3'- -GGCUUGUa----GGCGG----UCGCCUUg---CGGcc -5'
8908 5' -56.8 NC_002484.1 + 40651 0.68 0.579009
Target:  5'- aCCGAGaaaCUGCCuGGUGGAACuuugagGCCGGu -3'
miRNA:   3'- -GGCUUguaGGCGG-UCGCCUUG------CGGCC- -5'
8908 5' -56.8 NC_002484.1 + 38355 0.69 0.537182
Target:  5'- aCGAcgACAUgcgCCGCCGGCucGACGCCGc -3'
miRNA:   3'- gGCU--UGUA---GGCGGUCGccUUGCGGCc -5'
8908 5' -56.8 NC_002484.1 + 36876 0.7 0.447608
Target:  5'- gCCGcgaAGCAgaagccaaggCCGCC-GCuGAGCGCCGGg -3'
miRNA:   3'- -GGC---UUGUa---------GGCGGuCGcCUUGCGGCC- -5'
8908 5' -56.8 NC_002484.1 + 36766 0.73 0.319013
Target:  5'- gCUGAGCGUgaUGCaCAGCGGcGCGCCGa -3'
miRNA:   3'- -GGCUUGUAg-GCG-GUCGCCuUGCGGCc -5'
8908 5' -56.8 NC_002484.1 + 34973 0.66 0.664106
Target:  5'- gCCGAcuuCAUCCGCacccacCGGAAagcccugguuCGCCGGu -3'
miRNA:   3'- -GGCUu--GUAGGCGguc---GCCUU----------GCGGCC- -5'
8908 5' -56.8 NC_002484.1 + 33167 0.69 0.496449
Target:  5'- gCUGAAguUCUcaaGCCagagcaGGCGGAGCGgCCGGa -3'
miRNA:   3'- -GGCUUguAGG---CGG------UCGCCUUGC-GGCC- -5'
8908 5' -56.8 NC_002484.1 + 30013 0.69 0.533054
Target:  5'- aCCGAccacGCAgagCUGCggaggguggcugaGGCGGcAACGCCGGg -3'
miRNA:   3'- -GGCU----UGUa--GGCGg------------UCGCC-UUGCGGCC- -5'
8908 5' -56.8 NC_002484.1 + 27338 0.67 0.642816
Target:  5'- gCCG-GCGuUCCGCUGGCGG-AUGuUCGGg -3'
miRNA:   3'- -GGCuUGU-AGGCGGUCGCCuUGC-GGCC- -5'
8908 5' -56.8 NC_002484.1 + 26833 0.7 0.427902
Target:  5'- uUCG-GC-UCCGCCGGcCGGAucgcugcAUGCCGGa -3'
miRNA:   3'- -GGCuUGuAGGCGGUC-GCCU-------UGCGGCC- -5'
8908 5' -56.8 NC_002484.1 + 26096 0.73 0.289755
Target:  5'- gCCGAGCcagacaCCGCCGGCGG--UGCCGa -3'
miRNA:   3'- -GGCUUGua----GGCGGUCGCCuuGCGGCc -5'
8908 5' -56.8 NC_002484.1 + 25884 0.67 0.632153
Target:  5'- aCCGGccuguAUAUCUGCCAGCGcGcGGCGCUc- -3'
miRNA:   3'- -GGCU-----UGUAGGCGGUCGC-C-UUGCGGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.